Thermochaetoides thermophila: CTHT_0062250
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Entry
CTHT_0062250 CDS
T03100
Name
(RefSeq) putative exosome 3'->5 protein
KO
K07573
exosome complex component CSL4
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0062250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0062250
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CTHT_0062250
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CTHT_0062250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
S1
Motif
Other DBs
NCBI-GeneID:
18260263
NCBI-ProteinID:
XP_006696541
UniProt:
G0SE33
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
220 aa
AA seq
DB search
MTTTQPTLALPGQLLGPISKYQPGPGTHVHESNLYSSLLGTVHVTQPARAPGPVKRLNRI
TPAPTPAELPTISVSAARPAGSAASGLVTGRKREILPEVGNIVLCRVIRITPRQAVVTIL
VCGDTVLDAEWQGLIRVQDIRATEKDRVKVYESFRPGDIVRAEVISLGDQANYYLSTARN
ELGVILATSEAGNTMYPVSWREYRDPITGLTELRKVAKPY
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaacacagcctaccctagcacttcctggccagcttctcggcccgatatcaaaa
tatcagcccggtcccggcacgcacgttcatgagtccaatttgtattcgtcgcttcttggg
accgtccacgtcacccagccggcgcgcgcaccgggcccggtcaagcgcctgaacaggatc
acaccggccccgacccccgccgagcttcccaccatctcggtttcggccgcgcgtcccgcg
ggatccgcagccagtgggctagtgactgggcgcaagcgggaaatcctacctgaggttggc
aacattgtgctgtgccgggtcattcgtatcaccccgcggcaggcggttgtcacgatcttg
gtgtgcggggatactgtcctcgatgccgagtggcagggcttgatccgggtgcaggatatc
cgggcgactgagaaggaccgggtgaaggtgtatgagagcttccggcctggagatattgtc
cgcgccgaagtgatttccctcggcgaccaggccaactactatctctccacggcacgcaac
gagcttggtgtcattctggctactagcgaagccggtaacaccatgtatcccgtcagctgg
agggagtatcgcgaccctattacgggtctcacggagctgaggaaggttgcgaagccgtat
tga
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integrated database retrieval system
