Thermochaetoides thermophila: CTHT_0062910
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Entry
CTHT_0062910 CDS
T03100
Name
(RefSeq) eliminates the production of nonsense-containing-like protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03013
Nucleocytoplasmic transport
cthr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CTHT_0062910
03015 mRNA surveillance pathway
CTHT_0062910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0062910
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CTHT_0062910
5.6.2.5 RNA 5'-3' helicase
CTHT_0062910
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CTHT_0062910
mRNA cycle factors
Common to processing body (P body) and stress granule
CTHT_0062910
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
Viral_helicase1
SLFN-g3_helicase
AAA_22
ATPase
nSTAND3
SRP54
AAA_5
Ribosomal_S13_N
PBP1_TM
PhoH
Motif
Other DBs
NCBI-GeneID:
18260329
NCBI-ProteinID:
XP_006696599
UniProt:
G0SE91
LinkDB
All DBs
Position
Unknown
AA seq
1098 aa
AA seq
DB search
MEGAFTHLGNHLVSDSAAAIKAGGSDELSNLDPDEHLLYGVHGGRGGGARTGLSSARRRQ
DDDDNDTEVLDDDDDESLASVPVEGMKGLKLKKEEEKELPPHACAYCGIHSPASVVKCLT
CEKWFCSARGNSSSSHIINHLVRARHKEVQLHPQSSLGDTILECYNCGTKNVFLLGFIPA
KSDTVVVLLCRQPCAASTSAKDMSWDVSRWQPLIEDRSFLPWLVQPPTDAEQLRARHLTP
PMIAKLEEMWKESPNATVADLEKNNGVDDEPHPVLLKYEDPYHYQNIFGPLVKMESDYDR
KLKEAQSEDNLQVRWDMGLNNKHLVSFILPKIESGDVKLAVGDEMRLKYKGDLRPYWEGV
GYVIKIPNNQSDEVTLELRKSPNDKSVPTDVTTCFSADYVWKATSYDRMQAAMKTFAVDE
MSVSGYIFHKLLGHEVAVAPMKTQLPKKFHVPGLPELNHSQITAIKTVLSTPLSLIQGPP
GTGKTVTSATIIYHLCKMNNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVES
SVKFLALHEQVRMHTGNPDLRKLAQLKAEVGELSSQDEKKLKQLTRQAEREILANADVVC
CTCVGAGDPRLAKMKFRNVLIDESTQSAEPECMIPLVLGCKQAVLVGDHKQLGPVIMNKK
AAKAGLNQSLFERLVKLNLTPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTHAERIRKD
VDFPWPVADMPMMFWSNLGSEEISASGTSYLNRTEAANVEKVVTRFFKAGVKPSDIGVIT
PYEGQRSYIVSTMQNTGTFKKEWYKEVEVASVDAFQGREKDYIVLSCVRSNDNQGIGFLS
DPRRLNVALTRAKYGLVIIGNPKVLAKHELWHHLLVHFKDRKCLVEGPLNNLQTSLLQFP
KPKTAYRQPRWQQQQQQQQHVAGGYPNGRYGGMNGSVRDYETGSMVSYIPDDVSSIHSSA
LGGVGLSSAYPHIFSNFHPDQWPGLPGVHAGGRPGTKGRGRGAESVAGESVAPSEYTDAG
ASVIGGKGVGQGGASLGAGLTETVHTARPASYSQSDRLKQYVETGGRMGVGNGYGRRYDD
DEKSVSTAFASQIGSGFD
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgcttttactcacctaggaaaccaccttgtttccgactcggctgcggctatc
aaagccgggggctctgacgagctgtctaacctcgatccggacgagcaccttctttatggc
gtgcatggcggacggggcggtggtgctcgcaccggtctgagtagtgccaggcgccgccag
gacgacgacgacaacgataccgaagtcctggatgacgatgacgacgagagcctggctagt
gtcccggttgagggcatgaagggactcaagcttaagaaggaggaggagaaagaactgccc
cctcatgcttgcgcatactgcggtatccactctcctgccagcgtcgtgaagtgtctcact
tgcgaaaagtggttctgcagtgcccgtggcaattccagctcttcgcatattatcaaccac
ttggtgcgcgcccgccacaaggaagtccagctccacccacagtcgtccctgggtgacacg
attctcgaatgctacaactgcggtaccaagaatgtcttcctcctcggtttcattcctgcc
aagtccgataccgtggttgtgctcctgtgtcgtcaaccttgcgctgcgagcacatcggcc
aaggacatgagctgggatgtttcgagatggcagccccttattgaggaccgatccttcctc
ccctggcttgtccagccccctaccgacgccgagcaacttcgggcacgtcaccttacccct
ccgatgattgcaaagctcgaggaaatgtggaaagagagtcccaatgcgaccgtcgctgat
ttggaaaagaataatggcgtcgatgacgaaccgcatccggtgctgctcaagtacgaggac
ccgtatcactaccaaaatatctttggcccgctcgtcaagatggagtccgactatgacagg
aagctgaaggaggctcagtcggaggacaatctccaggttcgctgggatatgggcctgaac
aacaagcacttggtcagctttatccttccgaagattgagtccggagacgtcaagctcgcc
gttggcgacgagatgcgtctcaagtacaagggcgacctccgtccctactgggagggcgtg
ggctacgttatcaagatccctaacaaccagtccgacgaggtcactctcgaattacgcaag
tcaccgaacgacaagtctgtgccaaccgacgttacgacctgcttctcggccgactatgtc
tggaaggccacctcatatgaccgcatgcaggctgcaatgaagacctttgccgtcgacgaa
atgagcgtttcaggctacattttccacaagcttctcggccacgaagtggcagtcgctcct
atgaagacacagctgcctaagaagttccatgtgcctggccttccggagctgaaccacagt
cagattacagccatcaagacggtgctctcaactccgctgagcctaatccaaggtcctccg
ggcacgggaaagacagttacctcggccaccattatctatcatttgtgcaagatgaacaac
agccaagtgctggtctgcgcaccatccaacgttgccgttgaccagctttgcgagcgtatc
catcgtaccggcctgaaagtcgtccgtctgacggccaagtctcgagaggatgttgagtcg
tcggtgaagttcctggcattgcatgaacaagtgcgtatgcacactggcaacccggatctc
cgcaagcttgcgcagttgaaggccgaagttggcgaactgtcgtcacaggatgagaagaag
ctcaagcagttgacgcgccaagctgaacgggagatccttgccaatgcggacgttgtgtgc
tgtacctgcgtcggcgctggcgacccgcgcctggccaagatgaaattccggaacgtactg
atcgacgaatctacgcagtcggctgagcctgagtgcatgattcctcttgtcttgggttgc
aagcaggcagttttggtcggcgatcacaagcagctcggccccgtcatcatgaacaagaag
gccgccaaggctggcctgaaccagtctctcttcgagcgcttggtaaagctcaacctgacg
ccgatccgcttgaacgtccagtaccgaatgcacccatgcttgtccgaattcccttcgaac
atgttctatgagggttctctccagaacggcgttacccatgcggagcgcatccgtaaggat
gtcgacttcccctggccggtcgccgatatgcccatgatgttttggtcaaatctgggaagt
gaggagatttcggcttcgggtacgtcgtatctgaatcgtactgaagcggcgaatgtcgag
aaggttgtaacccgcttcttcaaggcgggcgtcaagcctagcgacatcggtgtgatcacg
ccgtatgagggccagcgtagctacatcgttagcaccatgcagaatacgggcacctttaag
aaggagtggtataaggaggtcgaggttgcctctgtggatgccttccagggccgtgagaag
gactacatcgtgctttcttgcgtccggtcaaacgacaatcagggcatcggtttcctctcg
gatccccgccgtctcaacgtcgcgctcactcgcgccaagtatggtctggtcatcatcggc
aatcccaaggtgcttgccaagcacgagctctggcatcatcttctcgtgcacttcaaagac
cgtaagtgcctggttgaaggcccgctcaacaacttgcagacatcactgctacagttccct
aaacccaagacggcctatcgccagccccgctggcagcaacagcaacaacagcagcagcac
gttgccggtggttatcccaatggtcgttatggaggcatgaacggttctgtccgtgactac
gaaactggctcaatggtctcgtatatccctgatgacgtctcttccatccacagctctgcc
ctcggcggcgtcggccttagctcggcctacccacacattttctccaacttccatcctgac
cagtggcccggtcttcccggcgtccacgcgggcggccgtcctggcaccaaaggccgtggc
cgcggcgcagagagtgtggctggcgagagtgtcgcccctagcgaatacacagatgccggc
gccagcgttatcggcggtaagggcgtcggccagggcggtgctagcttaggtgccggtctt
actgagacggtacacacagctcgccctgcttcatacagccagagcgatcggctgaagcag
tatgttgagacgggcggtcgtatgggtgttggcaatgggtatggtcggcggtatgatgac
gatgagaaaagtgtcagcaccgcatttgcgagccagatcggctcggggtttgactga
DBGET
integrated database retrieval system
