Thermochaetoides thermophila: CTHT_0071350
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Entry
CTHT_0071350 CDS
T03100
Name
(RefSeq) ATP-dependent RNA helicase-like protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0071350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0071350
03009 Ribosome biogenesis [BR:
cthr03009
]
CTHT_0071350
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTHT_0071350
Spliceosome [BR:
cthr03041
]
Complex A
U1 snRNP components
U1 related factors
CTHT_0071350
Complex B
CTHT_0071350
Ribosome biogenesis [BR:
cthr03009
]
Eukaryotic type
Pre-60S particles
Helicases
CTHT_0071350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
Motif
Other DBs
NCBI-GeneID:
18261173
NCBI-ProteinID:
XP_006697405
UniProt:
G0SFM2
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MSSYGGGYSGGGGGYSNNYDRNGGYSNGYSGSNGYSGGGGGYGSHGSRSYGGGGYGGGYG
GGDRGGDRMAGLGSGLQKPNWDLATLPKFEKSFYKEHPNVTARSMAEVEKFRRDHNITVS
GRDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKT
LTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEINKFGKSSRIRNTCIYGGV
PKGPQIRDLQRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKI
ISQIRPDRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLAANHRITQIVEVISESEK
RDRLIKHLEKIMDSRDTQNKCLIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWV
LDQFKTGKSPIMVATDVASRGIGYKRGVGIDLTLIKLVSPKIPKAQGPGALDLPGIYRNG
QPICQGGEYSRAGSRNILKTSHVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITF
FTTENAKQARDLVSVLQEAKQHVDPRLLEMARYSGGGGSSRYGGYRGRGGGGYRGGHRSA
AHSGANAVPVANRRW
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctacggcggcggttactctggcggtggcggtggttattccaacaactacgac
cgcaacggcggttactccaacggttattccggctctaatggctattccggcggcggtggt
ggctatggcagccacggcagccgcagttacggcggtggtggttacggtggtggttatggc
ggtggtgatcgcggtggtgatcgcatggccggccttggctccggtttgcagaagccgaac
tgggatcttgcgactctccctaagtttgagaagtctttctacaaggagcacccgaacgtc
actgcccgttccatggccgaggtcgagaagttccgtcgcgatcacaacatcactgtctct
ggccgcgacgtgccaaagcccgttgaaaccttcgatgaggcgggtttcccccgatatgtg
atggatgaggttaaggctcagggctttcccgcccccacggctattcaggcgcagggttgg
cccatggctctctctggtcgcgacgttgtcggtattgccgagactggttcgggaaagact
ttgacctactgcctccccgctattgtgcacatcaacgcccagcctctccttgcgcccgga
gacgggccaatcgtcctggttctcgctcccacgcgtgaactggcggttcagatccagcag
gagattaacaagtttggcaagtcctccaggattcgcaacacctgcatctacggcggtgtt
cccaagggcccccagattcgcgatctacagcgcggcgttgaggtgtgcattgccacgcct
ggccgtctgatcgatatgctcgagtctggcaagaccaaccttcgccgtgttacttacctg
gtcctcgacgaggctgatcgcatgcttgacatgggtttcgagcctcagattcgcaaaatc
atcagccagattcgtcccgaccgtcagaccttgatgtggtctgctacgtggcccaaggag
gtccgcaaccttgccgctgacttcctcacggacttcattcaggttaacattggctctttg
gatttggctgccaatcaccgcattacccaaattgtggaggtcatctctgagagcgagaag
cgcgaccgtctgatcaagcatctcgaaaagatcatggacagcagggatacccagaacaag
tgcctgatcttcgttggcaccaagcgtgttgccgacgacatcacccgtttcctgcgccaa
gacggctggcctgcgctttccatccacggcgataagcagcagaatgagcgtgactgggtc
ctcgaccagttcaagacgggcaagagccccatcatggttgccaccgacgtcgcttcgcgt
ggtatcgggtacaagcgtggagtaggcatcgacttgactttgatcaagcttgtgtctccc
aagatccccaaggcccaaggacctggagctttggacctccccggcatttaccgcaacgga
cagcccatctgccaaggaggagagtacagccgagcaggatcacgaaacatacttaagaca
tcccatgtgcgcaacattactcatgtgatcaactatgactatcccaataactcggaggac
tacatccaccgtattggtagaactggccgtgctggtgctaagggcacagccatcactttt
tttaccactgagaacgccaagcaggcccgtgatctggtaagtgtgctgcaggaggccaag
cagcacgttgatccacggctccttgagatggcccggtacagtggcggtggtggaagcagc
cgctatggtggctaccgtggccgcggcggtggaggataccgcggcggccatcgttccgcc
gctcatagtggcgctaatgccgtccctgtcgccaatcgccgttggtaa
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