KEGG   Caldalkalibacillus thermarum: HUR95_03190
Entry
HUR95_03190       CDS       T07471                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cthu  Caldalkalibacillus thermarum
Pathway
cthu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cthu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HUR95_03190 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cthu03021]
    HUR95_03190 (rpoC)
   03400 DNA repair and recombination proteins [BR:cthu03400]
    HUR95_03190 (rpoC)
Enzymes [BR:cthu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HUR95_03190 (rpoC)
Transcription machinery [BR:cthu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HUR95_03190 (rpoC)
DNA repair and recombination proteins [BR:cthu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HUR95_03190 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Peptidase_M23
Other DBs
NCBI-ProteinID: QZT34414
UniProt: A0A8X8I9Z2
LinkDB
Position
641944..645588
AA seq 1214 aa
MIDVNNFEYMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFASYVVIDPGETPLEKKQLLSEKEYRSYREKYGQAFKAGMGAEAIKELLL
DLELDKEVEMLKEELKTAQGQRRNRAIKRLEVLEAFRNSGNHPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKMYQCGLPKE
MALELFKPFVMKELVRREIAHNIKSAKRKVERVNPEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYISMERAGAIGEGSIFHSPAEAISAYQNGYVHLHTRIAIK
AGSLNKDSFTEKQKNALLITTVGKIIFNEILPKSFPYINEPTKENLQKNTPDKYFIYDKG
VNVKEKIASMPLVQPFKKGFLGDIIAEVFKRYQITETSKMLDRLKDLGFSYSTKAGITIG
IADIVVLEEKKEILERAEKEVAVVTKQFRRGLITEEERYDKVIAIWSKAKDEIQEKLMKS
LDPLNPIYMMADSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIS
THGARKGLADTALKTADSGYLTRRLVDVAQDVIVREADCGTDQGVDVTALQDGREVIESL
TERIVGRLAFETVKHPETGEVLVRPNEMITEDIAAKIEQAGITKVRIRSVFTCRTRHGVC
QKCYGRNLATGNLVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEL
FEARNPKGQAVISEVDGEVIEIKEVKDHREIVVQGEVEARSYPVPYGSRLKVSVGDKVVA
GQDLTEGSVDPKELLKVQGVRGVQTYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
IDPGDTDLLPGAMIDVHEYEDANTKMFAQGGRPATARPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDPLLGLKENVIIGKLIPAGTGMARYRLTKVVHAEEQQKAKDQEKQ
TPEVNQDEPVAVEK
NT seq 3645 nt   +upstreamnt  +downstreamnt
ttgatcgacgttaataattttgagtatatgcaaattggattggcgtcaccggacaagatt
cgctcctggtcttacggggaagtgaaaaaaccggaaaccatcaactaccgcactttgaag
ccggaaaaagaaggcctgttttgcgagaaaatttttggccctaccaaagattgggagtgc
cactgcggtaagtacaaacgtgtccgttacaaaggagttgtctgtgaccgttgtggcgta
gaggtgacacgttccaaagtaaggcgtgagagaatggggcatattgaactggccgcccca
gtctcccatatttggtatttcaaaggcattccgagccgcatgggtttaacgctggatatg
agcccccgggctctggaagaggtcatttactttgcttcttatgtcgtgattgatcccggt
gaaacacctttagagaagaaacagttgttatccgaaaaggaataccgcagttaccgtgaa
aaatacggccaggcgttcaaagcagggatgggagctgaagcgattaaggagctactttta
gatctggaactcgataaagaagtagagatgttgaaggaagaactaaagacagcccagggc
cagcgccgcaaccgtgcgattaagcgcttggaggttctggaagcttttagaaactcaggt
aatcatccgtcgtggatgattttggatgtcttgccggtcattccgcctgagctgcgcccc
atggtccagctggacggtggccgtttcgccacctctgacttgaatgacttgtaccgccgg
gtgattaaccgtaacaaccgcttaaagcgcctcttggatcttggcgctccggagatcatt
gtccaaaacgaaaaacggatgctgcaagaagcggttgatgccctgatcgacaatggccgc
cggggccggccggtaaccggaccaggaaaccgccccttgaaatcattaagccatatgtta
aagggtaagcaagggcgtttccgtcaaaatctgttgggtaaacgtgtggactattccggc
cgttccgtgattgtggtgggtccgcagttgaaaatgtatcagtgcggtttgcccaaagag
atggcgttggagttgtttaagcccttcgtgatgaaggagcttgtccgccgtgaaattgcc
cacaacatcaagagcgccaagcgcaaggtggagcgcgtcaaccctgaagtatgggatgtt
ttggaagatgtaatcaaagagcatcccgtgctgttaaaccgcgcgccaactctgcaccgc
ttgggcatccaggcctttgaacctgtcctggttgaaggccgggccattaaactgcacccg
ctggtgtgtacggcctacaacgccgattttgatggcgaccagatggcggtgcatgtgccc
ttatcggccgaagcccaggctgaagcccgcattttgatgctggcggcccaaaatattttg
aatcctaaagatggtaaacccgtcgtgacaccgtcacaggatatggtactgggcaactat
tacatcagcatggagagagcgggggctatcggggaaggaagtattttccacagtcccgct
gaagcgatctcggcttaccagaacggctatgttcatctgcacacccggatcgccatcaaa
gcaggttcgctgaacaaagattcctttactgaaaaacagaaaaacgccttgctgattacg
acggtgggtaaaatcatctttaacgaaattttacccaagtcattcccgtacattaatgaa
ccgaccaaagagaacttgcaaaagaacacacctgacaaatactttatctatgacaagggt
gtcaatgtcaaagaaaaaatcgccagcatgccccttgttcagccctttaagaaagggttt
ttgggcgatattatcgccgaggtgttcaaacgctaccagatcactgaaacatccaaaatg
ctggaccgcttgaaagatctgggcttctcttactcaaccaaagctggcattacgattggc
attgccgatatcgtcgttttagaagaaaagaaagaaattctggaacgggctgaaaaagag
gtagccgtggtcactaaacagttccggcgcggtttaatcaccgaggaagaacgttatgac
aaagtgatcgcgatctggagcaaagcaaaagatgagattcaagagaagttgatgaaatct
ctggatccgctcaacccgatctatatgatggcagattccggtgcgcggggtaacgcctcc
aacttcacccagctggccggtatgcgcggtttaatggccaacccctctgggcggattatt
gagttgccgattaagtccagcttccgggaagggctcaccgtgttggagtactttatctcc
acccacggggctcgcaaagggttggctgatacggcgttgaagacagcagactccggttac
ctgacacgccgactggtcgatgtggcccaggatgtgattgtgcgcgaagccgattgcgga
acagaccagggtgtggatgtcaccgccttgcaagacggccgggaagtgatcgaatcgctc
actgaacggattgtgggccgcttggcttttgagacggtgaagcatccggaaaccggcgaa
gtgctggttcgtcccaatgaaatgataacagaggatattgccgccaaaattgaacaggcc
ggcattaccaaagtacggattcgcagcgtctttacttgccgcacaagacacggcgtttgt
cagaagtgttacggacgcaacctggccactggaaacttggttgaaatcggtgaggctgtg
ggtattattgctgcccagtccatcggtgaaccaggtactcagctgaccatgcgcaccttc
cacacgggtggtgttgccggcgatgacattacccaaggtttgccccgggtgcaagagttg
tttgaggcccgtaatccaaaaggtcaagcggtaatctctgaagtggacggtgaagtgatc
gagatcaaagaagtgaaagaccaccgtgaaattgtggtccaaggtgaagtggaagcacgc
agttatcctgtcccgtacggttcccgcctcaaggtgagtgttggtgacaaagtagtcgcc
ggtcaagacttgaccgaaggttccgttgatccgaaggaactgcttaaagtacaaggcgta
cggggcgtgcaaacctatctcttgaaagaggtccaaaaagtgtaccgcatgcaaggggtt
gagatcggcgacaaacatattgaagtgatggtccgccagatgctgcgcaaagtgcgggtc
atcgacccgggcgatacggatctccttccgggagccatgattgatgtccacgagtatgaa
gatgcgaataccaaaatgtttgcccaaggcgggcgtccggccactgcaaggcccgttctg
ctgggcattaccaaagcatcccttgaaacggactccttcctgtccgctgcttctttccag
gaaacgacgcgtgtcttgactgatgcagcgatcaaaggaaaacgtgatccgctcttgggc
ttgaaagagaatgtgatcatcggcaagctgattccggctggcacgggcatggcccgatac
cgcttgaccaaagtggttcatgcggaggagcagcaaaaagctaaagatcaggaaaagcaa
acacccgaagtgaaccaggatgaacctgttgccgtggaaaaatga

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