Caldalkalibacillus thermarum: HUR95_04780
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Entry
HUR95_04780 CDS
T07471
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cthu
Caldalkalibacillus thermarum
Brite
KEGG Orthology (KO) [BR:
cthu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cthu03009
]
HUR95_04780 (rlmD)
Enzymes [BR:
cthu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HUR95_04780 (rlmD)
Ribosome biogenesis [BR:
cthu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HUR95_04780 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
TRM5-TYW2_MTfase
PrmA
Cons_hypoth95
Methyltransf_11
PCMT
Methyltransf_4
RrnaAD
Methyltransf_12
UPF0020
Ubie_methyltran
TPMT
Motif
Other DBs
NCBI-ProteinID:
QZT34661
UniProt:
F5L448
LinkDB
All DBs
Position
930513..931913
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AA seq
466 aa
AA seq
DB search
MSKKIQLPVQKNDEVELKIHDLNHEAMGVGRYEGYTLFVKDALPGEVVKAKVLKTKKNFG
YAKVLEILEQSPARMKPPCPIFARCGGCQLQHLAYEEQLKYKEQLVKNDLERIGGLDLNK
VNVYPVIGMEKPWRYRNKTQVPIGEEEGGLIGGFYRPRSHDIIDMEACLIQHEQHDQVIQ
KVKEIGTRLGIPAYNEDKHSGLLRHVVAKYGFATGQLMIVLVTNGEHIPAKNKLVDELVS
AFPNLKSIVQNINTKRTNVIFGDESKVLWGEPYIYDKIGDIRFAISARSFFQVNPVQTQV
LYEKAMAYADLEGHETVIDAYCGIGTISLFLAQKAKQVLGVEVVPEAVADAKRNARLNGM
TNVQFAVGEAEKIIPWWRAQGIKADVIVVDPPRKGCDGSLLKTIIEMKPERVVYISCNPS
TLARDIKILEAGGFETREVQPVDMFPHTSHVEVAAKLVVTYSHHLR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaaatacagcttccggtacagaaaaatgatgaagtagagctaaagatacat
gatctcaatcacgaagcaatgggtgtaggccgttatgaaggatataccttgtttgtcaaa
gatgccttgcccggcgaagtggtaaaagcaaaggtcctgaagacaaagaaaaacttcggc
tatgccaaagtgttggagattctagagcaaagcccggcgcgcatgaaaccgccctgtccg
atctttgcccgttgcgggggctgccagctgcaacatttagcctatgaggagcagctgaaa
tataaggaacagctggtgaagaacgaccttgaacggattggcggtttggatttaaacaag
gttaacgtttacccggtgataggcatggagaaaccgtggcgttaccggaacaaaacgcag
gtgccgatcggggaagaagaagggggactgattggtggattttaccgcccgcgcagtcat
gacattatcgatatggaagcctgtttgattcagcatgaacagcacgatcaagtcatccaa
aaggtaaaggaaatcggcacacggctggggatcccggcgtataacgaagataagcacagc
ggcttgttgcggcatgtggtagccaagtacggctttgccaccggtcaattgatgattgtt
ctggtcaccaatggagagcacattcctgccaagaataagttagtagatgaactggtgtcc
gcttttcccaatctgaaaagcatcgttcaaaatattaacaccaagcggaccaatgtgatt
tttggcgacgagagcaaagttttgtggggagagccttatatttatgacaaaattggcgat
atccgttttgccatttcagcccgctccttctttcaggtcaatccggtgcaaacccaggta
ttgtacgaaaaagccatggcctatgccgatttagaagggcatgaaacggtgattgatgct
tattgcggcatcggcaccatctctctgttcttggcccaaaaagcaaagcaggtgttgggg
gtggaagttgttcccgaagctgtggccgatgccaagcggaacgcccggctgaatgggatg
actaacgtgcagtttgccgtaggcgaggcagagaagatcatcccttggtggcgggcgcaa
ggcattaaagccgatgtcattgtcgttgatcccccgcgcaagggctgtgatgggtctcta
ttaaaaacaatcattgagatgaaaccggagcgggtcgtgtatatctcttgcaatccatcc
acattagcgagagatatcaaaatcttagaggctggcggctttgaaaccagagaggttcaa
ccagtagacatgtttccgcataccagccacgttgaggtggcagccaaacttgttgtgaca
tactcccaccacctgcgctaa
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