Caldalkalibacillus thermarum: HUR95_14050
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Entry
HUR95_14050 CDS
T07471
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cthu
Caldalkalibacillus thermarum
Pathway
cthu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cthu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUR95_14050 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthu03021
]
HUR95_14050 (rpoD)
Transcription machinery [BR:
cthu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUR95_14050 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r1_1
Exonuc_VII_L
tify
Motif
Other DBs
NCBI-ProteinID:
QZT33362
UniProt:
A0A8X8I8J0
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Position
complement(2738014..2739129)
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AA seq
371 aa
AA seq
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MADQQIEHQDIDLTLEQVKEQLTELGKKRGVLTYKEIMERLAPFDQDADQIDEFYEYLTE
QGIEALNDAEEDDELPLDMEDDDEYKLDDELVPPGIKINDPVRMYLKEIGRVPLLSAEEE
IELAKRIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDY
RKGYKFSTYATWWIRQAITRAIADQAPTIRIPVHMVETINKLIRVQRQLLQDLGREPTPE
EIAEKMDFTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLK
EQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP
SRSKRLKDFLE
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccaacaaattgaacatcaagacattgatctcacactggagcaagtaaaggaa
caactgacagaattagggaagaagcgcggcgtattaacctataaagaaatcatggaacgc
cttgccccatttgatcaagatgctgaccaaattgatgagttttatgaatatctgaccgaa
caggggattgaagcgctaaacgatgccgaagaagatgatgaacttccattagacatggaa
gatgatgatgaatataaactggatgatgaacttgttccacccggaattaaaatcaatgat
ccggtacgtatgtatttaaaagagattgggcgcgttcccctgttgtctgctgaagaggaa
atcgaactggccaaacggattgaacaaggggacgaagaagccaagcggcgtctggctgaa
gccaatttgcgtctggtagtcagcattgccaagcgttatgtgggacgcggtatgttgttt
ttggatttgattcaagaaggaaacatgggtttaattaaagctgttgaaaaatttgattac
cgcaaggggtacaaattcagcacttatgccacctggtggatccgtcaggccattacccgc
gccattgctgaccaggccccgaccattcgcattccggtacacatggtggaaaccatcaac
aaactgattcgtgttcaacgtcaacttttgcaagatttaggtcgtgaaccgacgccagaa
gaaattgctgaaaaaatggacttcacaccagaaaaagtaagggagattctaaaaattgcc
caggagccggtttctttggaaaccccgattggggaagaagatgactcccatcttggtgat
tttattgaagaccaggatgccctggccccttcagacgcagcagcatatgaactgctgaag
gaacaattggaagacgtactggatacgctaacggatcgtgaagaaaatgttctgcgtttg
cggtttggattagatgacggacggacgcgcacattggaagaagtgggtaaagtgtttggt
gtcacacgggagcgcatccgtcaaattgaagccaaagcgctgcgcaaactccgtcatccc
agccgcagcaaacgcttaaaagacttcttggaataa
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