Caldalkalibacillus thermarum: HUR95_17085
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Entry
HUR95_17085 CDS
T07471
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cthu
Caldalkalibacillus thermarum
Pathway
cthu02020
Two-component system
cthu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cthu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HUR95_17085 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUR95_17085 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthu03021
]
HUR95_17085 (rpoN)
Transcription machinery [BR:
cthu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUR95_17085 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
HTH_3
Linker_histone
HTH_38
HTH_21
HTH_Crp_2
HTH_17
HTH_23
HTH_12
DUF6471
HTH_AraC
Xre-like-HTH
DUF3990
HTH_9
HTH_31
HTH_Tnp_ISL3
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QZT33888
UniProt:
F5L4M5
LinkDB
All DBs
Position
complement(3336649..3338007)
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AA seq
452 aa
AA seq
DB search
MDVGFRLVQEQQLKLAMTPELRQAITLLQYPALDLIPYLQEQAQKNPLLEIEEPDLVKSL
IRPDKPPRKWEEEEEDYSIEYAVANDEYVNPIDYYAEKEITLQQYVLEQIHYLQLSEEEK
QVLIFMVGNLDENGYLDADYERIASVANCARETWDNCLVLLQQLEPYGVGARNLEECLLI
QLRHSPYHGDQLCQALIENHLADIAAKRYSRLARKFNTTVEEIKQRVEWIKSFSPKPGSV
FLSQKPKYIVPDVFVECLPDGRFVFQVNDSVLPRIHFNREYALMLAENRQAKKFLEQKVK
EYEWLKRGIEQRKKTILHVTQVIVERQKAFFDQGEAGLKPLTLKEVAQELGMHESTISRA
TNQKYMQTPRGLYELKFFFTQGVAKQNGELTSDAQIKEMIKQLIAAENKRKPLSDQKIAQ
HLQAKGISIARRTVAKYRDELGILSSSRRKEV
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggctttcgcttggttcaggaacaacaattgaaactggccatgacacctgaa
ttgagacaggcgatcacgctccttcagtatcctgcgttggaccttatcccttatttgcag
gagcaagcccaaaaaaaccctttgcttgaaattgaagagcctgatcttgtcaaaagtttg
attcggcctgataaacccccgcgcaagtgggaggaggaagaggaagattactctatagaa
tacgcggtcgctaacgatgagtatgtgaaccccatcgattactatgctgaaaaagaaata
actttacagcagtacgtcctagaacagattcattatttgcaattatcggaagaagagaag
caagtgctaatcttcatggtggggaatcttgatgaaaatggctaccttgatgcggactat
gaacgaatagcttccgttgccaactgcgcccgggaaacatgggacaactgtttggttttg
ttgcaacagctggaaccttatggtgtcggtgcccgtaacttggaagagtgcctgctcatt
cagctccgtcacagtccgtatcacggagatcagttgtgccaggcgctgatcgaaaatcat
ttggccgatatagccgccaaacggtattcccggttggccaggaagttcaacaccaccgtg
gaggagattaagcagcgggtagagtggattaaatcgttctcccccaagccgggcagcgtc
tttttatcccagaaacccaaatatatcgtgcctgatgtttttgtggagtgtttgcctgac
ggacgatttgtgtttcaggtgaatgacagcgtgttgccccgcatccattttaaccgggag
tatgccttgatgttagctgaaaacaggcaagccaaaaagtttttggaacaaaaagtaaag
gaatatgaatggctgaaacggggcatcgagcagcgaaagaaaaccatactgcatgtcacc
caggtcattgtcgaacggcaaaaagcgttttttgaccaaggggaggcagggttaaaaccc
ttgacgctcaaggaagtggctcaggaactggggatgcatgaatcaactatttccagggca
acgaatcaaaagtatatgcaaaccccgcgggggttatatgaattgaagttcttttttacc
caaggggttgccaagcagaatggggaattaacctcggatgcccaaattaaggagatgatc
aaacaactcattgcggctgagaataaacgcaagccattatctgatcaaaaaatcgcccag
catctgcaagccaaaggaatttccattgcccggcggaccgtggccaaataccgggatgaa
ctgggtattctctcttccagccggcgtaaagaagtgtag
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