Cupriavidus taiwanensis: RALTA_A0488
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Entry
RALTA_A0488 CDS
T00702
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase hydrolase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cti
Cupriavidus taiwanensis
Pathway
cti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RALTA_A0488 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cti03019
]
RALTA_A0488 (rhlE1)
Enzymes [BR:
cti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RALTA_A0488 (rhlE1)
Messenger RNA biogenesis [BR:
cti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RALTA_A0488 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
CAP63156
UniProt:
B2AHA7
LinkDB
All DBs
Position
1:498151..499701
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AA seq
516 aa
AA seq
DB search
MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML
QLLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG
INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL
NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE
LLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAG
TLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEL
GLLRDIERLIKRKLEQTVLPGFEVDPSIAPEPIQKGRQQRGGGGQGQGRGRAEARPAGAG
EGAQRQRPARQGQGAHGGAGTPGGQRGNGAANGNRAAQPAGARNPAPRRDGQDPARQQRA
AAQPARQPHDAAPAPARNRRPAPQAALLGGSRKPAR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctgaactcggcttgtccgaaaagattgtgcgtgccgtagccgaacagggc
tacaccaccccgactcccatccaggcccaggcaattcccgccatcctcaaaggcggcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgccggctttacgctgccgatgctg
cagctgctgtccgaaaccgcggcacgccaggccggcggcgcccagcgcggcggccgcgtg
gcggtgcgcgcgctggtgctgacgcccacacgcgagctggcggcgcaggtcgaagagagc
gtgcgcaactacggcaagtacctgcgcctgcgctcgatggtgatgttcggcggggtcggc
atcaacccgcagatcgagcagctcaagcgcggcgtggagatcgtcgtggccacgccgggc
cgcctgctggaccatgtgtcacaacgcaccatcgacctgtcgcaggtggaactgctggtg
ctcgatgaagctgaccgcatgctcgacatgggcttcatccacgatatccgcaagatcctc
aacgtgctgccggccaagcgccagaaccttctgttctcggcgacgttctcggacgacatc
cgagcgctggccgaccgcctgctgaacaatcccgcttcgatcgaggtggcgcggcgcaat
accaccgccgagaccgtggaccagcgcgtctatccggtcgaccgcgaacgcaagcgcgag
ctgctggcccacctggtgcgccagcatgactggcaccaggtgctggtgttcacgcgcacc
aagcatggcgccaaccgcctggccgagcagttgaccaaggacggcctgtcggcgctggcg
atccacggcaacaagagccagtcggcgcgcacgcgggcgctgtctgaattcaaggccggc
acgctgcggctgctggtggcgaccgatatcgccgcgcgcggcatcgacatcgaccagctc
ccgcacgtggtcaacttcgacctgcccaacgtgcccgaggattacgtccaccgtatcggc
cgcaccggccgcgccggcgccgaaggcgaggcgatctcgctggtgtgcgtggacgaactg
ggcctgctgcgcgacatcgaacgcctgatcaagcgcaagctcgaacagaccgtgctgccg
ggtttcgaagtcgacccgagcatcgcccccgagccgatccagaagggccgccagcagcgc
ggcggtggcggccagggccagggccgcggacgcgccgaggcacgtccggcgggcgctggc
gagggcgcgcaacgccagcgtcccgcgcgccaggggcagggcgcccacggtggcgcgggc
acgccgggcggtcagcgcggaaacggcgccgccaacggcaaccgtgccgcccagcccgcg
ggcgcgcgcaaccccgcgccgcgccgcgacgggcaggacccggcacgccagcaacgggcc
gcggcccagcccgcgcgccagccgcacgacgctgcgccggcacccgcgcgcaaccgccgt
ccggcgccgcaggcggcgctgctgggcggcagccgcaagccggcgcgctaa
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