Cupriavidus taiwanensis: RALTA_B0354
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Entry
RALTA_B0354 CDS
T00702
Name
(GenBank) conserved hypothetical protein; UPF0027; similar to E.coli rtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cti
Cupriavidus taiwanensis
Brite
KEGG Orthology (KO) [BR:
cti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cti03016
]
RALTA_B0354
Enzymes [BR:
cti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RALTA_B0354
Transfer RNA biogenesis [BR:
cti03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RALTA_B0354
Prokaryotic type
tRNA splicing ligases
RALTA_B0354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAP63550
UniProt:
B2AIF1
LinkDB
All DBs
Position
2:393698..394948
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AA seq
416 aa
AA seq
DB search
MTGAWTNMAGKTQYDVLDTGAGKPVKLWTRGVPVEGAAREQLLNTARMPFIFRHLAVMPD
VHLGKGSTIGSVIPTVGAVIPAAVGVDIGCGMMAVKTSLTASDLPDHLGQLRSAIEHAVP
HGRSAQGGRRDQGAWGNAPAHVDAAWAEMAPGFRRITDKYPHLARTNHRNHLGTLGTGNH
FIEVCLDEAQSVWFMLHSGSRGVGNAIGTTFITLAQQDMRQHLANLPDRDLAYLVEGSTH
YEDYIFAVSWAQAYARRNRELMMEAVLAAAQRVLRKPFQAQLEAVNCHHNYVQKEHHFGA
DVLVTRKGAVSARAGELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRSEAKRRF
TVADQKQATEGVECRKDAAVIDEIPMAYKDIDAVMAAQADLVEVVHTLRQVVCVKG
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgactggagcctggacgaacatggcaggcaagacccaatacgacgtactggacaccggc
gccggcaagccggtcaagctgtggacgcgcggcgtgccggtggagggtgccgcgcgcgag
caactgctgaatacggcgcggatgccgtttatcttccgccatctcgcggtgatgccggac
gtacatctgggcaaggggtcgaccatcggctcggtgatcccgaccgtcggcgccgtcatt
cccgcggcggtaggcgtcgatatcggctgcggcatgatggcggtgaagacctcgctaacc
gcctcggacctgcccgaccacctgggccagctgcgcagcgcgatcgagcatgccgtgccg
catggccgcagtgcgcagggcgggcggcgcgaccaaggtgcctggggcaatgcgccagcg
cacgtcgatgccgcgtgggccgaaatggcgccgggttttcgccgcatcaccgacaaatac
ccgcacctggcgcgcaccaaccatcgcaatcacctgggcacgctcggcaccggcaatcac
tttatcgaggtgtgcctggacgaggctcagtcggtctggttcatgcttcacagcggctcg
cggggcgtcggcaatgccatcggcacgaccttcatcacgctggcgcagcaggacatgcgc
cagcacctggccaacctgcctgaccgcgacctggcttacctggtggaaggctccacgcac
tacgaggactacatcttcgccgtgtcatgggcgcaggcctacgcgcgccgcaaccgcgag
ctgatgatggaggcggtgctggccgcggcgcagcgggtgctgcgcaagccgttccaggcg
caactggaagcggtgaactgccaccacaactacgtgcagaaggaacaccacttcggcgcc
gacgtgctggtcacgcgcaagggcgcggtcagcgcgcgcgccggcgaactgggcatcatc
ccgggctcgatgggagcgcgctcattcatcgtgcgcggcaagggcaacccggagtcgttc
tgctcctgcagccacggcgcgggccgcaccatgagccgcagcgaggccaagcgccgcttc
accgtggccgaccagaagcaggccaccgaaggggtggagtgccgcaaggacgccgccgtg
atcgacgagatcccgatggcgtacaaggacatcgacgcggtgatggcagcgcaggctgac
ctggtggaggtcgtgcatacgctgcggcaggtggtgtgcgtgaagggatag
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