Cupriavidus taiwanensis: pRALTA_0093
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Entry
pRALTA_0093 CDS
T00702
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cti
Cupriavidus taiwanensis
Pathway
cti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
pRALTA_0093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cti03400
]
pRALTA_0093
Enzymes [BR:
cti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
pRALTA_0093
DNA repair and recombination proteins [BR:
cti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
pRALTA_0093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAP63791
UniProt:
B2AJW4
LinkDB
All DBs
Position
pRALTA:complement(88395..90932)
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AA seq
845 aa
AA seq
DB search
MATTHARRRTKRGETEPSPPLERYEKKRDFSITPEPAGRKARRKKPARLSFVIQKHWARR
LHYDFRLELDGVLLSWAVPKGPSYDPAEKRIAIHVEDHPLDYAAFEGEIPPKQYGAGSVI
VWDRGTWVPVGDPREGMAAGKLLFDLHGEKLAGRWELVRIAKPGDKSEQWILFKKRDAWA
RTLSEFDVLTALPDSVIAKPLGALNAEDGDKESVAVLDEDPATAVKRAPRAPLPAKLAPQ
LATLSPTLPAGTGWIIENKFDGYRILARISDAGVTLFTRNGHDWTRKLASLAAEIEKLDI
SEGWLDGEIVVLRDGVPDFNALQNAIDGHRNDAIVYFAFDLPYLEGRDLRSLPLVQRRAQ
LAALVAERTERVRFSEAFDAPATQMFQAACQLGLEGLMFKRADSPYVSARTQSWLKAKCK
LRQEFVIGGYSDREGSRTEVGRLYLGVYADGELRYTGGVGTGWDSAAATDLRKRLVKLQV
DKSPFSTEARASRRWGGRRATAVQWVKPTLVAEVEFSEWTPEGHVRHASFKGLRTDHAAK
SIRREAVQTAVTPHGMAAIKVTNPERVIDKTEGITKVELVRYYESIAMLMLPHLKDRPLS
LVRAPEGIDAPTFFQKHAETAMPGLTERPASLWPGHAALLTADSAEAIVAAAQMNVVEFH
TWNSTARDIDHPDRVIFDLDPGAGVAWETMLEAAMLVHALLDELGLQSWLKTSGGKGLHV
VVPLAPQHSYDEVKAFSRAAVQHLAATLPQRFTARSGATNRKGKIFVDYLRNGFSQTTAA
AFSARARPGLGVSMPVSWEQLPKLKSGGQWTIRDAREYLSFQVADPWSSYWETPQMLTDA
IERLS
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggccacaacccacgcgaggcgcagaaccaagcgcggcgagacggagccatcgccgccg
cttgagcgctatgagaagaagcgcgatttcagcatcacccctgagccagcgggacggaaa
gcgcggcgaaagaagccagcacgcttgagcttcgtcatccagaagcattgggctcgccga
ctgcactacgactttcggttggagctcgatggcgtgctgctcagctgggccgtgccaaag
ggaccgagctacgatcctgcggaaaaacgtatcgccatccatgtcgaagaccacccgctc
gactatgccgcattcgaaggcgaaatcccgcccaagcaatacggcgccggatcggtgatt
gtttgggaccgcggcacctgggtaccggtcggcgatccccgcgaaggcatggccgcgggc
aagctactcttcgatctccacggcgaaaagcttgccggccgctgggaactggtgcgcatc
gccaagcccggcgacaaatccgagcagtggatcctgttcaagaaacgcgacgcgtgggcg
cgcacgttgtcggaattcgatgtgctgacggcgctgccggacagcgtcatcgccaagccc
ttgggcgcgctcaatgcagaggatggcgacaaggaatctgtcgcggtcctcgacgaggat
cccgccaccgccgtcaagcgcgcgccccgtgccccgctgcccgcaaagctcgccccgcaa
ctggccacgctgtcgccaacacttcccgccggcaccggctggatcatcgagaacaagttc
gacggctaccggatcctggccaggatctccgacgccggggtcacgctctttacccgaaat
gggcatgactggacccggaagctggcttcgctggcggcggagatcgagaagctggacatc
tcggaaggctggctggacggcgagattgtcgtgctgcgcgacggcgtgccggatttcaac
gccttgcagaatgccattgacggccatcgcaatgacgccatcgtctacttcgccttcgac
ctgccctacttggaaggccgcgatctgcgcagcttgccgctggtgcagcgccgggcccaa
ctggccgcgctggtcgcggagcgcacggagcgcgttcgcttcagcgaagccttcgacgcg
ccggcgacccagatgtttcaggcggcgtgccagctcggcctggaaggcttgatgttcaag
cgcgcagattcgccctatgtctcggcacgtacgcagagctggctgaaggcgaagtgcaag
ctgcgtcaggagttcgtcattggtggctattccgatcgcgaaggctcccgtactgaggtc
ggcagactctatcttggcgtctacgccgacggcgaactgcgttacaccggcggcgtcggt
acgggctgggacagcgccgcggcgacggacctgcgcaagcggctcgtgaaactgcaagtg
gacaaaagcccattttcgacggaagcccgagcgagccgtcgatggggaggccgccgcgcc
accgctgtgcaatgggttaagccgacgctggtcgccgaagtggaattctccgagtggacg
cccgaaggccatgttcgccacgcctcgttcaagggcctgcgcaccgaccatgccgcgaag
tcgatccggcgcgaagcggttcagaccgccgtgacaccccacggcatggccgcgatcaag
gtcacgaatcccgaacgcgtgatcgacaagaccgagggcatcaccaaagtcgaactggtg
cgctactacgagagcatcgcgatgctgatgctgccccatctgaaggaccgcccgctatcg
ctggtgcgcgccccggagggcatcgatgccccgacgttcttccaaaagcatgccgaaacc
gcgatgccggggctgaccgagcggccggcgtccctatggccgggacatgccgcgctgctg
acggccgactcggccgaagcgattgtcgcggccgcccagatgaatgtggtggagtttcac
acctggaactccactgcccgcgacatcgaccatcctgaccgggtcatcttcgacctcgat
cccggcgcaggcgtcgcttgggagacgatgctcgaggccgccatgttggtgcacgcgctg
ctggacgaactgggcctgcagtcgtggctgaagacgagcggcggcaaggggctacacgtc
gtcgtgccgctggcaccgcagcattcctacgatgaggtgaaagccttctcgcgggctgca
gttcagcatctggccgccaccctgccccagcgcttcaccgcacgttccggcgccaccaac
cgcaagggaaagatcttcgtcgactacctgcgcaatggcttctcgcaaaccaccgccgcc
gcgttctcagcgcgtgcccggcccggacttggggtctcaatgcctgtgtcgtgggagcag
ttgccgaaactcaagagtggcgggcaatggacgatccgggatgcccgtgaatatctgagc
ttccaggtcgcggacccatggtcgtcctattgggaaaccccacagatgttgaccgacgcg
atcgaacggctaagttaa
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