Crotalus tigris (Tiger rattlesnake): 120298142
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Entry
120298142 CDS
T08476
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120298142 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120298142 (COL27A1)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120298142 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
GH131_N
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
120298142
NCBI-ProteinID:
XP_039177497
LinkDB
All DBs
Position
Unknown
AA seq
1752 aa
AA seq
DB search
MTLEPRPVAFRLKAAALRGGFPFLWTVFCLTCFLGFTRGNREDVDVLQRLGLVGPRTLDL
SHSVPQGVAPFTLGVILTQQARVEVPFSSVIPFPVSADLTVMLSVCSLRVNSAFLFTVKS
RRKKLQLGVQFLPGKVVVYVGHKRSVYFDYDVHDGRWHNFAIDIRSKTVTLVTSCGKERV
QADLRRKKSKALDPAGSFLLGRLNQRSVQFEGALCQFDIYLSTKAAHDYCKYLKRQCRQL
DAVRPDLLPFTLGLSKDLRTFEMTPKQVDLAAMGLTNLTTVHPPTRVFKTSASQRDRRFQ
LASSTVRAPKAPSAAPTAKMRSTVALTIPEVSQPLRDLQQIATVARPMSHRPTARVLDGP
HAASGVKKPLWSPRPEVLAFPNSTVSFALVPDKQAPQKYPGSQGPTIRSSQTPDTTKPTT
KNRRNSSSSRSPATTKRRWEKVTSGPTPKEVGIQPTMKKPSPTMATVFYTKPALGEAYPV
YETHGHNSDFITLAAADGFQDFNPVGPTLFPFVIGLPGWKGDPGPPGAPGLPGILGLPGK
RGPRGPLGPHGNPGRPGPPGAKGQKGDPGSSPGKAWHGQKGDMGLPGLTGHPGSPGRKGQ
KGYLGPTGHSGEPGVRGAQGNPGAKGYPGRQGLPGPIGEPGPKGSQGYIGPPGLLGTPGA
DGERGTPGVPGKKGKMGRPGFPGDFGERGPPGIDGNPGDLGALGPTGVPGLLGDVGVLGE
MGFPGPKGLKGLMGNPGEHGLKGDKGEEGMAGIPGEIGFQGDKGSHGLPGIPGLRGKPGR
MGRVGDKGADGIPGPPGPEGFPGSIGPPGENGPEGIKGKPGARGLPGPRGIPGQEGNEGP
PGPYGPPGEEGPPGQKGFPGKPGPEGLKGEPGNRGRLGKIGDEGLMGFIGPIGEPGGVGE
KGDRGTVGSPGPIGVKGSMGHPGISGEVGDPGPLGPPGPPGVRGSPGIRGPKGRRGARGP
DGTPGEAGPQGSKGHPGDPGKPGLDGQEGKIGEMGEIGTRGFPGIQGPSGPQGAKGPPGD
LGPQGPPGPPGLLGEIGHKGPPGAPGQRGLPGETGMKGDLGPLGIPGEQGLVGQRGEPGL
EGDSGSAGPDGLKGDKGQPGPEGERGDKGQGGDQGKEGPPGVPGTPGIRGPEGKPGQQGE
KGKAGLKGNKGHEGQLGETGPPGPMGSTGTQGPKGSRGTLGPRGPPGQMGVQGEMGLKGY
QGHPGSPGTMGFPGPKGEKGEQGDDGKKEGPPGPPGERGPTGNRGDRGESGDPGYPGQGG
VDGERGTAGQQGLPGHPGPPGSPGLKGSKGSLGQKGKPGIRGARGSRGSPGPLGLPGPRG
VIGREGQEGTPGVDGIPGKDGNRGQKGEQGEDGEEGTPGIPGKRGNFGVPGLPGAQGPTG
FKGERGSPGEVGPLGKRGSQGGTGLPGTSGDPGSKGQPGDVGESGFPGIAGLFGPKGPPG
DLGFKGIQGPKGPQGIWGQEGVIGPVGISGRPGNTGPKGEKGSQGEAGLQGPKGIPGPRG
PPGPPGPPGIQAALGQDDFAAAFHSTLIASAVFRSESYEQMDLPVMDQGGEIFKTLHYLS
VLIQSIKRPLGTKENPTRVCKDLMNCEQKMQDGVYWIDPNLGCSSDSIQVTCNFAQGGHT
CLSPITASKLDFDIGRVQMNFLHLLSSEVVQNITIHCLNTPVWPEGPSEGASLRFKAWNG
QLFEQGGQLTPDVVINNCQPSGWWPHISLPFGIINLAGWLQGEKGVERWREERRVSEISV
FFVDREVHFKAV
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgacgctggaaccgaggccggttgccttcagactcaaagccgccgcgctaagggggggg
ttcccttttctctggacggttttttgtctgacttgcttccttggattcacgcgtggaaac
cgtgaagatgtggacgtccttcagaggttgggcctggtgggaccaaggaccttggacctg
tcacactctgttcctcagggagttgctcccttcacgttgggagtcatcctcacccagcag
gcacgagtcgaagtgcccttcagctcagttattcccttccccgtcagcgcggacctgacc
gttatgttaagtgtgtgttccctccgggtcaacagcgctttcctattcaccgtcaagagc
agaaggaagaaattgcagctgggcgtccagttccttcccgggaaggttgtcgtctacgtc
ggtcacaagcgctccgtctacttcgattacgacgtccacgacgggcggtggcacaacttc
gcgattgacatccgaagcaaaacggtcaccttagtcacctcctgcgggaaagaaagggta
caggcggatttgcgtcgtaaaaaaagcaaggccttggacccggcgggatcattcctcttg
ggaagactcaaccagcgctcggtccagtttgaaggtgccctttgccagtttgatatttat
ctgtcgaccaaggcagctcatgattactgcaagtatctgaaaagacaatgcagacaattg
gatgccgttcggccggacctcctgccttttactctggggctgtccaaagatctgagaact
tttgaaatgacaccaaagcaggtagacctcgcagcgatgggcttgacgaacttgaccact
gtgcaccctcccacaagggtcttcaagacctccgcttcgcagagggataggaggtttcag
ctagcatctagcactgttcgagctcctaaagcaccatcggcagcaccaaccgcgaagatg
aggtccaccgtggcattgacaatcccagaagtgtcgcaacccctccgtgatctccaacag
atcgccacagtggcacgtccgatgtctcaccggcctactgccagggttttagatgggcct
cacgcagcttccggcgtgaagaagcctctttggtcaccccgccctgaggtcctggccttc
ccaaactcgacggtgagctttgccctggttccagacaagcaagcaccccaaaagtatccg
ggtagccaaggacccaccatcaggtcctctcagacaccagacaccacgaagccaacgacg
aagaaccgaaggaactcgtcaagtagccgttctccagccaccacaaagcgcaggtgggaa
aaagtcaccagtggccccaccccgaaggaggttgggatccagccaacaatgaagaaaccc
agtcccaccatggctactgtcttctacaccaaaccagcccttggagaggcttaccctgtt
tatgaaacacacggacacaactcagatttcatcacgctggctgctgcagatggctttcag
gacttcaaccccgtgggccccaccttatttcccttcgttattggacttcctgggtggaaa
ggagatccaggacccccgggtgctcctggtttacctgggatcctgggccttcccggcaag
cgaggaccacggggacctctcggccctcatggaaaccctggccggcctgggccacctggt
gcaaagggccagaaaggggatcctggatcatcacctgggaaagcatggcacggtcaaaag
ggtgatatgggtttacctgggttgacaggacatcctggatcacctggtcgaaagggacag
aaaggatatcttggtccaacaggccattctggagagccgggtgtccgaggtgctcaagga
aatccaggagccaaaggttatcctggcaggcagggattacctggaccgataggagagcct
ggcccaaaaggtagccaggggtacattggcccgccaggactgttgggaacgcccggggcc
gatggggaaagaggaacccccggagttcctgggaagaagggcaagatgggtaggccgggt
tttcccggcgattttggggaacgtggaccaccaggtattgatggaaatccgggagacctc
ggagctcttggtcccactggagtccccggccttcttggtgatgtaggtgtccttggagaa
atgggcttcccgggaccaaaaggactaaaggggttgatgggaaatccaggagaacatgga
ctgaaaggtgataagggtgaggaagggatggcaggcattcctggagaaattggtttccaa
ggggacaagggtagccacggattgcccgggatacctggattacgaggaaaaccaggcaga
atgggaagagttggtgacaaaggtgcagatggaattccaggtccacctggcccagagggc
ttcccgggaagcatcggccccccaggagaaaacggccccgaaggtattaagggaaagcct
ggcgcgaggggtttgcctggtcccagaggaatacccggtcaagagggcaatgaaggacca
ccaggtccctatggccccccaggggaagagggtcctccagggcagaaggggtttcctggc
aaaccgggcccggagggtttaaagggtgaaccaggaaaccgaggacgactgggaaaaatt
ggtgacgagggtctgatggggttcatcggtccaatcggggagcctggcggcgttggggag
aagggagatcggggcacagttggatcaccagggccgataggcgtcaagggatcgatgggt
catcctggaatatcaggagaagttggagaccctggcccccttggaccaccaggcccccca
ggagtccgtggctccccagggataagaggaccaaaaggtcgacggggcgctcgaggtccc
gatggaacaccaggcgaagcgggaccccagggatccaagggccacccaggtgatccaggt
aaaccaggactggacggtcaagagggaaagattggagaaatgggagagattggaactcgt
ggcttccctggcatccaaggaccttctggaccacaaggagcgaaagggcctcctggagat
ttgggacctcaaggcccaccaggaccaccgggccttttgggagaaattggacataaggga
cctcctggtgcaccaggacagcgaggacttccaggagaaactgggatgaagggtgatctt
ggtccactggggattcctggagagcaaggattggttggccaacggggagaacctggcctt
gaaggagacagtggctcagcaggaccagatggactcaagggagacaaagggcaaccaggc
ccagaaggggaacgtggggacaaagggcaaggaggggaccaaggaaaagaaggcccccct
ggcgttcctggaaccccgggcatccgaggtccagaaggaaaacctggccaacaaggagaa
aagggcaaagctggacttaagggcaacaaaggtcacgagggacagcttggagagacgggc
ccacctggacctatgggctccacagggactcagggccccaaaggatcaagaggtaccctt
ggacctaggggacctccgggccagatgggtgtccaaggagagatgggattaaaaggctat
cagggacacccaggatcaccgggcaccatgggatttcctggacctaagggagaaaaggga
gaacaaggtgatgatgggaagaaggagggaccccctgggccacctggagagagaggtccc
actggcaacaggggagatcgtggggagtctggagaccctggttatcctggccaaggagga
gttgatggcgagcgaggaacagccgggcagcaaggtttgcctggacatccaggaccccca
ggatccccaggcctcaaaggatccaaaggcagtctgggtcaaaaaggaaaaccaggaata
aggggtgccagaggcagccgtggatcaccgggtcctcttgggctgccaggcccccgaggg
gtcattgggcgagaaggacaagagggcacccctggagttgacgggattcctggaaaagac
ggcaaccgtgggcaaaaaggtgaacaaggtgaggatggggaagaaggcaccccagggatc
ccagggaaaagagggaacttcggagtccctggcttacctggagcacaaggccccacagga
tttaagggagaaagaggttcgcctggagaggttggtccattgggtaaaagaggttctcaa
ggtggaacgggactccctgggacctccggtgatccaggatccaaaggacagccgggagac
gttggtgaatcagggtttccagggattgctggactctttggcccaaagggaccacctgga
gatcttggcttcaaaggcatccagggccctaaagggcctcaaggaatctggggccaagaa
ggtgtcattggtccagttgggatttcaggtcgaccaggaaacactggtcctaaaggagag
aaaggcagccaaggcgaagcgggtctccaaggtccaaagggtatcccagggccccgagga
cctcctggcccaccgggcccaccaggaattcaagctgcattggggcaagatgacttcgct
gcagctttccactccacgttgattgccagcgctgtcttcaggtctgagagctacgaacag
atggaccttccagtgatggatcaaggaggggagatctttaagaccttgcactacctcagt
gtcctcattcagagcatcaagagacccttggggacaaaagaaaaccctacccgtgtttgt
aaagacctcatgaactgtgaacaaaagatgcaggatggcgtctactggattgacccaaat
cttggctgttcttcagacagcattcaggtcacctgcaacttcgcccaaggaggtcacact
tgcctcagtcctatcacagcatctaagctggacttcgatatcggaagagtacaaatgaac
ttccttcacctcttgagctctgaagtcgttcagaacatcactatccattgcttgaacaca
ccggtttggccagaaggaccatcagaaggggcctccctacgcttcaaggcctggaatggg
cagctcttcgaacagggagggcagctcacaccggacgtggtgataaacaattgtcagcct
tctggatggtggccacacatatcccttcctttcggtatcattaacttggcaggatggcta
caaggagaaaaaggagtagagagatggagagaagagagaagggtgagtgaaatatctgtg
ttttttgtggaccgtgaagtccactttaaggccgtttag
DBGET
integrated database retrieval system
