Crotalus tigris (Tiger rattlesnake): 120299717
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Entry
120299717 CDS
T08476
Symbol
TRIM56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ctig04121
]
120299717 (TRIM56)
Enzymes [BR:
ctig01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120299717 (TRIM56)
Ubiquitin system [BR:
ctig04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120299717 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-C3HC4_2
zf-RING_5
PQQ_2
RING_XB3-XBAT31
ANCHR-like_BBOX
zf-C3HC4_4
Phytase-like
Motif
Other DBs
NCBI-GeneID:
120299717
NCBI-ProteinID:
XP_039180752
LinkDB
All DBs
Position
Unknown
AA seq
677 aa
AA seq
DB search
MAARASSLWETLSSSFLTCTICLQHYCQPKILPCLHSYCQDCLKKLLGGSKQELRCPECR
EVVPLPAGVEGLKTNFFINGLLDLVPPVEEAKATCSLCPLIGQDASSVAVSHCIDCADHL
CQACARGHRCSRLTHDHLLVDMEAYCSGKYNEEIRKRQASRCKEHKDEDLQYFCVTCAAA
LCRECRLGPHLEHPCLPLSEAAKARRPILTGLLDGVEEKMHLLAKAKVNLEKERQEMETW
NVNIRIVVEQTCAKAVEQLLSHKEKVLGQLSGYLEERKEASQLLLSELGFQEQVASTTVA
FARKVLNLGQAVEIVSLEQMISERLRQLQSFSWEPLTLQVPKLHIQPDLLYGCNLFLLEF
HEKAATTTPECSMGDSTQRAQKEKKQKQQQRPQGAEGGDASREEKAPSGESLGLIPKPVF
FCSFWVKVPTDKKRPQITGLFPFGSNEILVADEENKKLKRFSLQGEFKGTIPVPSNVAPF
SVAAVGNKAVFTAGSQLYVLNETGGIMWQKALKGGQASHAVTTCDGNCVVVSVAGHLEVF
NLKGELLEKIVPEASHERCLVFLGRWKKGFVASDWYRHSVVLLDRNGDLVTEYQEEQLSG
SQPGSVCADAPGIVYVVLRELNKIVAFSEAGEELGSFLTTENSIFKPRVVTIAGDGHFVV
ALTNGTIHVFKIKYQGK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggctgccagagcatcctccctctgggagaccctctccagcagcttcttgacttgcacc
atttgcttgcagcactattgccagcccaaaatcctaccctgcctccacagctactgccag
gactgtctgaagaagctgctgggtgggtcaaagcaggagctgcggtgccctgaatgccgc
gaggtggtgcctctcccagccggcgttgaaggtttgaagaccaacttcttcatcaacggc
ctcctggacttggtgcctccggtcgaggaggccaaggccacctgcagcctgtgcccgctc
attggccaagatgccagctctgtcgctgtgtctcactgcatcgattgtgccgaccacctg
tgtcaggcctgtgcccgcgggcaccgttgctcccggcttacccacgaccacctcctggta
gacatggaggcttactgctctgggaagtacaacgaggagatccggaagcgtcaggcctca
cgctgcaaagagcacaaggatgaagacctgcagtatttctgcgtcacctgtgctgctgcc
ctctgccgggagtgccgtctgggccctcacctggagcacccgtgcctgcccctgtcggag
gccgccaaagcccgccgccccatcctcacaggcctcttggatggggtggaggagaagatg
cacctcctcgccaaggcaaaggtcaacctagagaaggagaggcaggagatggagacgtgg
aacgtgaacatccgcatcgtggtagagcagacatgtgccaaggccgtggaacagttgctc
agccacaaggaaaaggtcctgggccaactctctggctacctggaggagcggaaggaggcc
tctcagctgctgctttctgagctgggcttccaggagcaggtggcctccaccacggtggcc
ttcgcccggaaggtgctgaatctgggccaagcggtggagatcgtgtccttggagcagatg
atctccgagaggctgaggcagttgcagagcttctcctgggagcccctcaccttgcaggtc
cccaagctccacatccagccagacctcctctatggctgcaaccttttccttctggagttt
cacgagaaggccgcgacaaccacccctgagtgcagcatgggggattccacccaacgggct
cagaaggaaaaaaagcagaagcaacagcagcggcctcagggagcagaagggggggacgcc
tccagagaggaaaaggccccaagtggggaaagccttgggctgatcccaaaacccgtcttc
ttctgcagcttctgggtgaaagtcccaacggacaaaaagcggccacagatcacgggcttg
ttcccgttcggctccaacgaaatcctcgtggctgatgaggagaacaagaagttgaagcgc
ttctctctgcagggcgagttcaagggcacgatcccggtgccgagcaacgtggccccattc
agcgtggctgctgtgggcaacaaggcggtcttcaccgccggatcccagctctacgtctta
aatgaaacgggggggattatgtggcaaaaggcactcaaggggggccaggccagccacgca
gtgaccacctgtgacgggaactgcgtggtcgtgtctgtggcgggacatctggaggtgttc
aacttgaaaggagaactcttggagaagattgtgccggaggcctcccacgaaaggtgcctg
gtattcctgggcagatggaaaaagggatttgtggcatctgactggtaccgacatagcgtg
gtgctgctcgacaggaatggggatctggtgaccgaataccaggaggagcagctgagtggg
tctcaaccaggcagcgtctgtgctgatgcccccgggatcgtctacgtggtgcttcgggag
ctgaacaagattgtggccttttcagaggccggggaagagctgggatcatttctcacaaca
gagaatagcatcttcaagccacgagtggtcactattgccggggacggacattttgtggta
gccctcaccaacggcaccatccatgtctttaagatcaagtaccagggcaagtaa
DBGET
integrated database retrieval system
