Crotalus tigris (Tiger rattlesnake): 120299855
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Entry
120299855 CDS
T08476
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120299855 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctig03021
]
120299855 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120299855 (SUPT5H)
Transcription machinery [BR:
ctig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120299855 (SUPT5H)
RNA polymerase I system
120299855 (SUPT5H)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120299855 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW5_SPT5
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
Arabino_trans_N
DUF3912
Motif
Other DBs
NCBI-GeneID:
120299855
NCBI-ProteinID:
XP_039181052
LinkDB
All DBs
Position
Unknown
AA seq
1073 aa
AA seq
DB search
MSDSEDSNFSENESERSSEPEEVEENEAEERGSVVESEKEVEEEEEEEEDEYDEEEDEDD
DRPAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGAR
RLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVK
CKIGEERSTAVALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVG
NLRMGYWNQQMVPIKEMTDVLKVVKEMTNLKPKSWVRLKRGIYKGDIAQVDYVEPSQNQI
SLKMIPRIDFDRIKARMSQKDWVAKWKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEG
NRYSRKGFLFKSFAMLAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPG
DNVEVCEGELINLQGRILSVDGNKITIMPRHEDLKDMLEFPAQELRKYFKPGDHVKVIAG
RFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHELGELVLLD
PQTVGVIVRLERETFQVLSMNNQLVTVRHQAVNRKKDNRFAVSLDSEQNNIHVKDIVKVI
EGSHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTKHLILAGGSKPRDVTNVTAGGFV
PMSPRMSSPMHPSSGGPRGGFGGGGMNRGRGRRDNELIGQTVRISRGSYKGYIGMVKDAT
ESTARVELHSTCQTISVDREHLTIVDSKKPSGMPSGYGRTPMYGSQTPMYGSGSRTPMYG
TQHDGNRTPHYGSQTPLHDGSRTPAQSGAWDPNTPSRTEEEFDYGFDDEPTPSPQGYGAT
PNPQTPGYPDPSSPQVNPPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSPQSFHPV
APSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQ
SSSDWVTTDIEVKVHDTYLDSHVVGKTGIIRSVNGGMCSVYVKKCEKVVSISSEHLEPVT
PAKNDKVKVLLGEDREATGMLLSIDGEDGIVRMNPEEQLRILNLRFLGKLVAA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcgaagacagcaacttttccgaaaatgagagcgagcgcagcagcgagcct
gaggaggtggaggagaatgaggcagaagagcggggcagcgttgtagaaagcgaaaaggaa
gtggaggaggaggaagaagaggaggaagatgaatatgacgaggaggaagacgaagatgat
gatcggcctgcaaaaaaacccagacacggaggctttattttggacgaagcggatgttgac
gatgagtatgaagacgaagatcagtgggaggatggagcagaagatatcctggagaaagaa
gaaatcgaagcctccaacatcgacaatgtggtgctggacgaagaccgctccggagcccga
agactgcagaacttgtggagggaccaaagagaggaggagctgggcgaatattacatgaag
aaatacgccaagtcttcggtgggcgagactgtgtatggcggatccgacgagctttctgat
gacatcacccaacagcagctgcttccgggagtcaaggaccccaacctttggacggtgaaa
tgtaagattggagaggagcgttccactgcagtcgccctgatgaggaagttcatcgcctac
cagtttacagacacacccttgcagatcaaatcggtggtcgctccagagcacgtgaagggc
tacatctacgtggaggcctacaagcagacccatgtgaagcaggccatcgaaggggtgggc
aacctccggatgggctactggaaccagcagatggtgcccatcaaggagatgaccgacgtc
ctgaaggtggtgaaagagatgaccaacctcaagcccaaatcttgggtgcgactcaagagg
ggaatctacaaaggtgacatcgctcaggtagactatgtggagcccagccagaatcagatc
tcgctcaagatgatcccacgcatcgattttgatcgcatcaaagctcgcatgagccagaaa
gactgggtggcgaaatggaagaaattcaagcgtcccccacagcgtctctttgatgcggaa
aagatccggtctttgggcggtgatgtggcctctgatggggattttctcatcttcgaaggg
aatcgctacagccggaaaggcttcctcttcaagagctttgcgatgctggctgtgatcacc
gaaggagtgaagcccactttatccgagctggagaagtttgaggaccagcccgaagggatc
gacttggaagtggtgacggagagcacaggcaaggaacgggaacacaacttccagccggga
gacaacgtggaggtgtgcgaaggggagttgatcaatctgcagggcaggatcctgagcgtg
gacgggaacaagatcaccatcatgcccaggcatgaagacctcaaggatatgctggagttc
ccagctcaggagctgcgcaaatacttcaaaccgggggatcacgtgaaagtcatcgccggg
cgctttgaaggtgacacgggactgattgtccgtgtggaggagaattttgtcatcctcttc
tctgacctgacaatgcacgagctcaaagttctcccccgagaccttcagctctgctccgag
accgcctctggtgtggatgtggggggccagcacgagctgggggaactggtgctgctggac
ccccagacagtcggggtcattgtgcgcctcgaacgcgagaccttccaggtcctgagcatg
aacaaccaactggtgactgtccggcaccaggcggtgaatcggaagaaggacaaccgcttt
gcagtgtccctggactcggagcagaacaatatccacgtgaaggacattgtgaaggtcatt
gaagggtctcattcgggccgcgagggggagatccggcacatcttccggggctttgctttc
ctgcactgcaagaagctggtggagaacggagggatgttcgtctgcaagacgaagcatttg
attctggcgggggggtccaagccccgggacgtcaccaacgtcacggctggtggcttcgtg
cccatgagtcctcggatgagcagccctatgcatcccagctctggagggccacggggcggc
tttggtggaggcggcatgaaccgaggccggggtcgccgggataacgagctcattggacag
acggtgcggatttcccgagggtcttacaaaggctacatcgggatggtcaaggatgccacg
gaatccaccgccagggtagagctgcactccacgtgccagaccatctcagtggatcgggag
catctcaccattgtagattccaaaaagccgtctggcatgccctctggctacggacggacc
cccatgtacggctcccagacgccgatgtacggttcgggctcccgcacgcccatgtatggc
acccagcacgatggaaaccggacaccacactacggctcccaaacacccttacacgatggc
agccggacgcctgcccagagcggcgcctgggatcccaacaccccttccaggacagaggaa
gagtttgactacgggtttgacgatgagccgacgccttctccccaaggctacggggcgacc
cccaacccccagaccccaggctatccagacccttcctccccacaggttaatcctccgtac
aaccctcagacgcctggcacccccgccatgtacaacacagaccagttctctccgtacgct
gtcccgtctcctcagggctcctaccagccgagccccagccctcaaagtttccacccagtg
gcgcccagtcctgtgggctaccagaacacccactcccccgccagctaccacccgactcct
tcgccaatggcttaccaggctagccccagccccagcccagtgggctatagccctatgacc
ccgggggctccttccccaggtggttacaaccctcacaccccgggctctgggattgagcag
agctccagcgattgggtcaccaccgatatcgaagtcaaagtgcacgacacgtacctggac
agccatgtggtgggaaagactggaatcatccgtagtgtgaatggcgggatgtgttcagtc
tacgttaagaaatgtgaaaaggtagtcagcatttcaagcgaacacctggagcctgtgaca
ccagccaagaatgataaggtcaaagtcctcttgggagaagaccgcgaagcgacggggatg
ctgctgagcattgatggggaagacggcattgtccgcatgaacccagaagagcagctcaga
atcctcaacttgcgtttcctcggcaaactcgtagcagcttag
DBGET
integrated database retrieval system
