Crotalus tigris (Tiger rattlesnake): 120300225
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Entry
120300225 CDS
T08476
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03008
Ribosome biogenesis in eukaryotes
ctig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120300225 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
120300225 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctig03021
]
120300225 (XRN2)
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120300225 (XRN2)
03009 Ribosome biogenesis [BR:
ctig03009
]
120300225 (XRN2)
03016 Transfer RNA biogenesis [BR:
ctig03016
]
120300225 (XRN2)
Transcription machinery [BR:
ctig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120300225 (XRN2)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120300225 (XRN2)
Ribosome biogenesis [BR:
ctig03009
]
Eukaryotic type
Pre-60S particles
RNases
120300225 (XRN2)
Transfer RNA biogenesis [BR:
ctig03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120300225 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
120300225
NCBI-ProteinID:
XP_039181905
LinkDB
All DBs
Position
Unknown
AA seq
957 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVSCTEEKAKEYNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMESVEEKQRIRQEIMEKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHETKDCQGLPKEKQGEHDQFADCPPGMEQE
FIFIRLCVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTENGYVNLERVQMIMLAVGEVEDSIFKKRKDDEENFKRRQKE
KRKRMKREQHTMLGGQYTPQPLGRGNRSSHQPISNPRHTAYEMRMQDRQNTTPSVSANSS
FTSDGTSSTTGGIKRKTEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDVNDKKFRRKVV
QSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADLVSDFEKGTKPFKPLEQLM
GVFPAASGNFLPLTWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLR
AALAQVYPNLTSEEMRRNSLGGDVLFVGKHHQLHDFILEQYKSNEKEPVDIAPELCHGIQ
GKITLDENPILPDKAVQSPVPLLRDLTQNSAISVNFQDPQYQEDYIFKAVVLSGAKKPAA
VLKPGDWEKTNYDGKSWKPQLGFNRDRRQVHLDQSAFRTLGHTMSRDRGQSGSGVYSNIG
PPGAYSQGNTYRSLLGRPQHQIPKLLSNLRPQDSWLGPTPLFQQPPQRFDRNPGTTPLLA
WNRMPHSQGSPYQQNQYQGPGGPMNYTQRPSDQMERGRQSYGRPYPLPPSSGRYNWN
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccggcgtttttccggtggctgagccgcaaatatccctccatcatcgtgtcc
tgcactgaggaaaaggctaaggaatataatggtattaaaattccagttgacaccagtaag
ccgaatcccaatgaagtggaatttgataatttatacttggatatgaatggcattatccat
ccttgtacacatcctgaggacaagccagcacccaaaaatgaagatgaaatgatggttgca
atttttgagtatattgacaggctattcaacattgtgagaccaaggagacttctctacatg
gcaatagatggagtggctcccagggcaaagatgaatcaacagagatccagaagattcaga
gcatcaaaagaaggaatggaaagtgtagaagagaagcagagaattagacaagaaattatg
gagaaaggtggctttctacctccagaagaaattaaagaaagatttgatagcaattgcata
actccaggaacagaatttatggacaatcttgctaaatgtcttcgttattatattgctgat
cgtttaaacaatgatcctggatggaaaaacttaacggttattttatctgatgcaagtgct
ccaggtgagggtgaacacaaaataatggattacatccgtaggcaaagagcccagccaaac
catgatccaaatactcatcactgtttatgtggtgctgatgctgaccttattatgcttgga
ttagctacacatgaaccaaattttactataatcagagaagaatttaagcctaataaacct
aaaccgtgtggtctttgtaaccaatttggacatgaaactaaggactgccaaggcctacca
aaggaaaaacaaggggagcacgatcagtttgcagattgtcctcctggtatggaacaagaa
ttcatatttattcgcttatgtgttttgagagaatatttggaaagagagctaacaatggcc
agcttgcctttcacttttgatgttgaaagaagcatcgatgactgggttttcatgtgtttc
tttgtgggaaatgattttctccctcatttaccctcattagagatcagggaaggagcaatt
gatcgcctggtgaacatatataaaaatgttgtccacaaaaccggaggttatcttacagaa
aatggttatgtcaacttggaaagagtgcagatgataatgctggctgttggagaagttgaa
gatagtatttttaagaagcggaaagatgatgaggaaaatttcaaaagaagacaaaaagaa
aaaagaaaaagaatgaagagggaacaacataccatgcttggtggacaatacaccccacaa
ccattgggaagaggaaacaggtcaagccatcagccaattagtaatccaagacacacagcc
tatgaaatgagaatgcaggacagacaaaacactactccttcagtttctgctaattcaagc
ttcacgtctgatggtacatcatccacaacaggaggaattaagcgaaaaacagaggacagt
gacagtgaaccggagcctgaagataatgtcaggttatgggaagctggctggaaacagcgc
tattacaagaacaaatttgatgttgatgtgaatgataaaaagtttcgtcgtaaagttgta
cagtcttatgtggaaggactttgctgggttctccgatactattatcagggatgtgcttcc
tggaaatggtattatcctttccactatgcaccatttgcttcagattttgaaggtattgca
gacctggtctcggactttgagaaaggaaccaaaccattcaaacctcttgaacaactgatg
ggagtcttcccagctgccagtggtaatttcctcccactaacatggcggaaacttatgtct
gatccagattcaagtataattgacttctatcctgaggactttgctattgatctgaatggg
aaaaaatatgcttggcaaggggttgctctgttgccttttgttgatgaacgccgtctaaga
gctgctctggcacaggtgtatcccaacctcacttctgaagaaatgagaagaaatagtctt
ggtggtgatgtcctttttgttgggaaacatcatcagcttcatgacttcattcttgaacag
tataaatctaatgaaaaagagccagtagatatagcccctgaactgtgtcatggaatccag
ggaaagattaccttggatgaaaatcccatccttccagataaagcagtgcaatctcctgta
ccgctgctgcgtgatctgacacagaattctgcaataagtgtcaactttcaagatccacaa
taccaagaagactatatttttaaggcagttgtattatctggggcaaaaaaacctgcagca
gttctgaaaccaggtgactgggagaaaacaaattatgatggcaaatcttggaagccacag
cttggctttaatcgtgataggaggcaggttcacttggaccagtcagcattcagaacatta
ggacatacaatgtcaagggacagaggacaatcaggaagtggagtatacagtaatattggt
ccccctggagcttacagtcaaggaaacacatatagatcattgctaggcagaccacagcat
cagattcccaaattgctgtcaaatcttaggccccaagattcctggctgggtcctacacct
ctatttcaacaaccaccacaaagatttgacagaaatcctggaaccactcctcttcttgcc
tggaaccgcatgccccattcccagggatcaccatatcagcaaaatcagtaccaaggtcca
gggggaccaatgaattacacacaaaggcccagtgatcagatggaacgtggaagacagagt
tatggaaggccttacccattgccaccctcatccggaagatacaactggaattag
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