Crotalus tigris (Tiger rattlesnake): 120300408
Help
Entry
120300408 CDS
T08476
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120300408 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120300408 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120300408 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120300408 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120300408 (COL4A1)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120300408 (COL4A1)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120300408 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
120300408
NCBI-ProteinID:
XP_039182304
LinkDB
All DBs
Position
Unknown
AA seq
1674 aa
AA seq
DB search
MGSSLAGTGIALLLAVLLLPGRRSWSEAAGGCSGCGKCDCSGVKGQKGERGLPGLQGLVG
FPGVQGPEGPPGASGTKGDTGEPGLPGTKGTRGPPGQAGYPGNPGLPGIPGGDGPPGPPG
IPGCNGTKGERGPLGPPGLPGLLGNLGPPGPPGIKGDPGEIIGIPPHGLQKGEKGLPGHP
GLSGAPGLPGVAGPIGPPGPPGRQGLPGPPGPPGEKGHMGLNFQGPKGDKGEHGVMGPPG
PQGVDTWHGEKGTIVIQGDKGDPGEKGEDGLPGPPGQSIKEEKGEPGKPGPRGRPGKDGE
DGEKGERGVPGQPGIPGHPGIVGPKGDKGVAGPPGPPGIVTGEEEEEVFGEKGDPGPHGF
PGRKGEPGPKGSQGNPGPPGPPGQAIPGPRGFPGERGRKGDQGPPGTSLPGPKGRDGFTG
SRGLPGPPGPPGGTDGIECERGPPGDPGLQGIPGLSGYTGERGEKGEKGEGCLECDGAGF
PGPPGPQGLQGEPGIPGPPGAKGDRGLPGSEGIPGMAGPPGAPGKIGISGPKGEPGDIFY
DSILKGEKGLPGLPGQPGIPGKEGRPGKDGVPGIPGPKGASGTIGLKGDRGLPGISGLPG
SPGDRGFPGLPGVGSSGPQGDKGEKGLSGIPGTPGLPGPKGEAGHVISLPGPPGARGFPG
PAGNPGLQGDKGDPGIPGRPGLPGEKGLAGPPGIGFPGPSGPPGFPGQPGPQGSRGEKGD
PGSQGAPGTAGAKGQKGEAGLGLPGAKGFPGPQGRDGIPGSKGDQGYPGVPGDKGLPGVP
GQPGSKGELGPPGLPGVQGSPGEPQMGSPGPPGPPGQFGPPGPLGPPGIKGERGHPGVPG
LDMPGLKGDKGSPGTQGLSGVPGLPGLPGLQGQQGHPGVPGLKGEMGIMGTPGIQGPPGP
IGTPGTPGEKGSLGFPGVAGQRGDPGLKGEKGEAGLPGEPGSMEHVDMENLKGQKGEQGD
KGIKGVIGEKGSPGIYGSPGMPGKDGDPGLPGQPGSKGDSGTPGFPGEQGFPGEKGSMGE
MGLPGLPGEKGFQGLSGETGQPGSPGIKGEKGQKGNAGLPGIGFPGTSGEKGQQGWPGSS
GLPGEKGEKGIPGISGIPGFPGIKGQPGLPGSPGVIGPPGEKGQKGTPGLSGFPGLKGQP
GDPGAQGSQGTAGEKGEPGYDGIPGTPGSKGDSGLPGRGFPGIPGAKGERGPKGDVGSPG
SPGSPGVPGIKGDIGFVGPQGPPGQPGIPGLPGKIGEGPKGDRGPPGQPGLQGLPGPQGS
VGVPGLSGEKGEKGSSGWPGQPGRPGPKGDPGVQGIPGNPGFPGTSGQKGDMGPPGIPGP
QGLKGSSGFPGSKGVQGDQGFSGTKGLPGPPGPPGPFQLQKGEPGLPGLIGPAGPKGFPG
SPGPKGQQGVIGAAGLTGPPGIPGFDGTPGQKGERGPVGPPGPRGFPGPPGPEGMPGTMG
PPGSPSVAHGFLVTRHSQTTEEPSCPFGTRLMFYGYSLLYVQGNQRAHGQDLGSAGSCLR
KFSTMPFLFCNINNVCNFASRNDYSFWLSTPEPMPMSMAPLTGESIRPFISRCAVCEAPS
MVIAIHSQTVQIPPCPEGWNSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIE
CHGKGTCNYYANAYSFWLATIERNEMFKKPTSSTLKAGELHSNVSRCQVCMKRT
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcagcctggcggggacgggcatcgcgctcctcttagcggtgctgctccttcca
gggcggcggtcctggtcggaggcggcggggggttgttctggctgtggaaaatgtgactgc
agtggagtgaaggggcaaaaaggtgaaagaggtttgccaggtttacaaggcttggttgga
tttcctggagtacaaggaccagaagggccaccaggagcctctggaacgaagggtgatact
ggagaaccaggactaccaggaacaaaaggaactagaggcccccctggtcaagcaggctat
cctgggaatcctggtcttccgggcatccctggaggagatggcccacctggtcctcctggg
atcccaggatgcaatggaacaaagggagaaagaggtcctcttggcccacctggcttacct
ggcttacttggcaatctcggacctccagggcctccaggaataaagggagatccaggagaa
attattggaatcccaccacatggtttgcaaaagggtgagaaaggattgcctggacatcct
ggattgtcaggagcacctggacttccaggtgttgctggccctattggaccacctggacct
cctggaagacaaggtcttccagggccacctggacctccaggtgagaagggtcatatgggc
ttgaatttccaaggtccaaaaggggataagggtgagcatggtgtcatgggccctcctggt
ccccaaggagtagatacatggcatggagagaaagggaccatcgtcatacagggagacaaa
ggtgatcctggtgaaaaaggtgaagatggattaccagggccaccaggccagagcatcaaa
gaggaaaaaggggaacctgggaaacctggtccacggggaaggcctggaaaagatggagag
gatggagagaagggagaacgtggagtacctggtcagccaggaattcctggacatcctggt
atagttggacctaaaggagacaagggtgtagcaggacctcctggacctccaggaattgtt
acgggtgaagaagaagaagaagtgtttggtgaaaagggtgacccaggacctcatgggttt
ccaggaaggaaaggtgaaccaggtcccaaaggttctcaaggtaatccagggccaccaggt
cctccagggcaagctattccaggaccacgtggttttcctggtgaaagagggagaaaaggt
gaccaggggcctcctggaacatctttgcctgggccaaaaggaagagatggatttacagga
tctcgtggtttacccgggcctccaggcccacctggtggaacagatggaattgagtgtgaa
cgtggtccacctggtgacccaggtcttcaaggcatcccaggactgtcaggctacacagga
gaaagaggagaaaaaggtgaaaaaggcgaaggctgcttggagtgtgatggagcaggtttt
cctggaccaccagggccccagggccttcaaggggaaccaggcattccaggaccaccaggt
gctaaaggtgatagaggccttcctggatctgaaggcattccaggcatggcaggacctcct
ggtgcacctggtaagataggaatctcaggaccaaaaggagaacctggagatattttctac
gactccattttaaaaggtgaaaaaggattaccaggattacctggacaaccgggtattcct
ggcaaagaaggaaggccaggaaaggacggtgtccctggcatcccaggacctaaaggagca
tctggaaccattggattaaaaggagatcgtggactcccaggaataagtggtttaccaggg
tcccctggagacagaggtttccctggacttccaggagttgggagttctggaccacagggt
gataaaggagaaaaggggctttctggaatccctgggacccctggacttccaggtcccaaa
ggtgaagctggacatgtcatttctctgcctggtcccccaggggccagaggttttcctgga
cctgctggaaatccaggtctccaaggtgacaagggagacccagggatcccaggaagacct
ggtctgccaggtgaaaaaggtctggcagggcctccaggaattggatttcctggcccttca
gggcccccaggctttcctggtcagccaggtccacaaggttcaagaggcgagaagggagat
cctggttcccaaggtgcgccaggtacagctggagccaaaggacagaagggtgaagctgga
ttaggtctcccaggtgctaaaggctttcctggtccccaaggacgagatggtattcctgga
tcaaaaggtgaccagggatatcctggtgtgccaggggacaaaggacttcctggcgtaccc
ggtcagccaggatctaaaggtgaactgggtcctcctggattaccaggtgtacagggctcc
cctggtgaaccccaaatgggctctcctggcccccctgggcctccaggacaatttgggcct
ccaggaccactaggaccgccaggaatcaaaggggagagaggccacccgggtgtccctggg
ttggatatgccggggcttaaaggagataaaggtagcccaggaacacaggggctgtcaggt
gtgccagggttgccaggcttacctggcttacagggacaacaaggacatccaggtgttcca
ggactgaaaggagaaatgggaattatgggtacccctggaattcaaggtccccctggtcct
ataggaactcctggaactccaggtgaaaaaggtagcctaggttttcctggagtggcaggc
caaagaggtgatccaggtttaaaaggtgaaaaaggtgaagctggactcccaggggagcca
ggatcaatggagcatgttgacatggaaaatctgaaaggccaaaaaggagaacaaggagat
aaaggaataaaaggggtaataggagaaaagggatctccaggaatttatggcagcccagga
atgccaggcaaggatggagatcctggtttaccaggccaaccaggatcaaaaggagattca
ggcactccaggattcccgggtgaacaaggatttcccggagaaaaaggatcaatgggtgaa
atgggtttaccagggctacctggagaaaaagggtttcaaggcctttcaggtgagacaggt
caaccaggatctcctggaattaaaggtgaaaaaggacagaaaggaaatgctggacttcct
ggaattggcttccctggaacttctggtgagaagggtcaacaaggatggccgggcagttca
ggcttaccaggagagaaaggtgaaaagggtattccaggtatttcaggcatccctggattc
ccaggcatcaaagggcagcctggccttccaggttctccaggtgttataggaccgccaggt
gaaaaaggacagaaaggaacccccggcttgagtggttttccaggcttaaaaggacaacca
ggtgaccctggagcacagggttcacagggaactgctggagaaaaaggtgagccaggttat
gacggaatcccaggcactcctggttcaaaaggtgattcaggtcttccaggtagaggattt
cctggaattccaggtgcaaaaggagaaagaggtcctaaaggagacgtgggttctccaggg
agtcctgggagtccaggagttcctggcataaagggagacattggatttgttggcccacaa
ggtcccccaggccaaccaggcattcctgggttaccagggaagattggtgagggacccaag
ggtgaccgggggcccccagggcaaccggggcttcaagggcttcctgggcctcaaggatct
gtaggagttccaggattatcaggagaaaaaggagaaaaaggaagttcaggttggccaggg
caacctgggagacctggacccaaaggtgatccgggagttcaaggaatccctggcaatcct
ggtttccctggaacttctggtcagaaaggtgacatgggacctcctggaattccaggaccc
caaggtctaaaaggttcttcaggtttccctggatccaagggagtacaaggtgaccaaggg
ttttctggaactaaaggtctgccaggcccgccaggtcctccaggcccttttcaacttcag
aaaggtgaaccaggcctacctggtcttataggccctgctggccccaaaggatttcctggt
tctccaggaccaaaagggcaacaaggtgtaataggagctgcgggtttgactggcccccca
ggaataccaggatttgatggcacacctggtcagaaaggagaaaggggccctgtgggtcct
ccaggtccgagaggctttcctggtccacctggtcctgaaggcatgccagggacgatgggt
ccaccgggcagtccctctgtggctcatggtttccttgtgaccaggcacagccaaaccaca
gaggagccctcctgcccatttgggacaagactcatgttctatggatattctttgctttat
gtacaaggcaatcaacgggcccacggtcaggacttgggctctgctggaagctgtctacgt
aaattcagcacaatgcctttcctattctgcaatattaacaatgtctgcaattttgcttca
agaaacgattattctttttggttgtccaccccagagcccatgccaatgagcatggctcct
ctaacaggagaaagcatcaggcctttcatcagcaggtgtgctgtgtgtgaagctccttct
atggtaatagcaatccacagccaaacagttcaaatcccaccatgtccagaaggctggaac
tctctgtggatcggttactcctttgtgatgcacaccagtgcaggggcagaaggctccggg
caagcactggcctctccgggctcctgccttgaagagttccgcagtgcacccttcattgaa
tgccatggaaagggcacctgcaattattatgccaatgcctacagcttctggcttgccact
attgagaggaatgaaatgttcaaaaaacctacgtcttccacactgaaggccggagaattg
cactcaaatgttagccgctgccaagtctgtatgaagagaacataa
DBGET
integrated database retrieval system
