Crotalus tigris (Tiger rattlesnake): 120302631
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Entry
120302631 CDS
T08476
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120302631 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctig03021
]
120302631 (POLR1A)
Enzymes [BR:
ctig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120302631 (POLR1A)
Transcription machinery [BR:
ctig03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120302631 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF787
DUF7222
Motif
Other DBs
NCBI-GeneID:
120302631
NCBI-ProteinID:
XP_039187283
LinkDB
All DBs
Position
Unknown
AA seq
1709 aa
AA seq
DB search
MAAKEVPWRRLTGLSFGMYTDAEIRKLSIKSITNPLFLDNAGTPSPNGLYDLALGPLDNK
EVCVTCMQDFNNCPGHLGHIELPLTVYNPLFFDKLFLLMRGSCLNCCHLTCPRAAIHLLL
NQLTLLEIGLIQEVHDLEAFLSRFLDESSDAIGTEIEEVLSCHTKDMLQNNQFRDYNAHV
KNVCECRSKLISQFWKLHMTSKKCPNCKAGRSLIRKEHNSKLTVTYPTVVTQKSGKQKVV
EEVATIDETQLGKRGYMTPLTAKQHIEVLWKNEGFFLCKLFSGMTVTGDLTFNPEMFFLN
KLVVPPSRYRPVNCVGDQMFANGQTVNLQAVMKDALLIRKLLAFIAQEQSQPLQIENGDL
KTIIDQPLEPLDHSVLATIPGQTTADKLYNSWIRLQSHVNILFDSDMDKLISEKYPGVRQ
ILEKKNGLFRKHMMGKRVDYAARSVICPDMYIQTNEIGIPMVFATRLTYPQPVTPWNVQE
LRQAVIKGPNEHPGASMIINEDGSRTILSTTSQTQREAIAKQLLTPSTGAPKPGIKIVCR
HIKNGDILLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
NELGRAEAYVLACTDEQYLVPKDGKPLAGLIQDHMVSGTSMTTRGCFFTREQYVELVYQG
LMDKKGKVKLLSPAIVKPQCLWTGKQVVSTLLLNVIPEGHFPLNLSGKAKISGKAWTIAS
ACRIHRSDLDSMCESQILIRNGELLCGVLDKAQYGSSAYGLVHCCHEVYGGETSGKLLTA
LARIFTAYLQFYRGFTMGVEDILVKYKADQKRCNVIKESTNCGIKAVRAAFNLSQTSSCE
ELRSKWQDAHLQKDQRDFNMIDLKFKEEVNCCSNEINKVCMPLGLHRSFPDNNLQLMVQS
GAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPKSGGFVASRFLTGIK
PSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLIVHYDMTVRDSDGSVVQFLYG
EDGLDIPKTQFLQPKQFPFIADNHKVIWKSKHLDEVMPKMNPQQASKQFKLIKRWQAKHQ
QSLRRKGGFLLFSQEMLAYIKAEMSTGGSLVYGRDPAAVKLLNMWYELNEKTRRKYQKRA
ARCPDPSLSNWRPDIYFASVSETFENEVKNFLGEWDAQNRLNYSKSELSLQRLQELLCLK
WQQSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANI
KTPMMSIPVLNTKKAQKRVKRLKKKLSRVCLGEVLHKVDIEETLCLEGTLSKHRIYTIRF
SFLPYKCYQEEKCVKPRDILHFMETRFFKMLLETIKRKSLKLASYNTVSTRKAIQKDLED
EEEIGASQEDQNDNEAETEEDRFPDSGMTEGDADATDTKRKENQEEEVDYESEEDHEMGD
DDDIPDREMTAPDEQNPEALETQDKLYSSSSSSQTARSKRKRWNEMAQHRINAVLESHDA
IEKYAYDIDNELWCEVSLKLSLTKEYFDLASLVTSLANSTVIQETMGITRCLLNETSNKN
GEVVLTLQTEGINLPELFYYSDIFDMNKLYCNDIHAMANTYGIEAALKILEREIKDVFAA
YGIVVDPRHLSLVSDYMCFEGVYKPLNRYGMQSNSSPLQQMTFETSYKFLKEATMLGSHD
ELLSPSACLVVGKVVKGGTGLFDLKQPLK
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaaaagaggtgccgtggaggcgcctgacggggttgtcgtttgggatgtatacg
gatgcagagatacggaaactgagtataaaatctataaccaatcctctttttcttgataat
gcgggtactccatctccaaatggactatatgatttggctttgggtccacttgacaacaag
gaagtttgtgttacttgcatgcaagacttcaacaattgtcctggtcatctaggtcacata
gaactacccctcactgtttataatcctctcttttttgataaattattccttctgatgcga
ggttcctgtttgaattgttgccatctaacatgtccacgagctgcaattcatttattacta
aatcagctaacgctactagaaataggactgattcaagaggtccatgatcttgaagcattc
ctgagtaggtttttagatgaaagctcagatgcaattggtactgaaattgaagaagtatta
agttgccacacaaaggatatgctccaaaataatcagtttagagactacaatgcacatgtt
aaaaatgtatgtgaatgtagaagtaaacttatctctcaattttggaaattacacatgacc
tcaaagaaatgtccaaactgcaaagcaggaagatcacttattcgtaaagaacataacagc
aagttgactgtaacttatcccactgtcgtaactcagaagtcaggcaaacagaaagtagtg
gaggaagtagcaactatagatgaaactcagctgggaaaacgaggctacatgacacctttg
actgccaaacaacacattgaagttttgtggaagaatgaggggtttttcctttgcaagctt
ttctctgggatgacagtcactggtgatttaactttcaatcctgaaatgtttttcctaaat
aaacttgttgtaccaccttccagatatcgtccggtgaattgtgttggagatcagatgttt
gcaaatggccaaacagtgaatttacaagctgttatgaaggatgctctcctcattcggaaa
cttctggctttcattgctcaagaacaaagtcagccgttacagatagaaaatggagatctc
aagacaataatagaccagcccttggaacctctagaccattctgtcttggcaacaattcct
ggacagactactgcagataagctttataacagttggattcgtcttcaaagccatgtgaat
attttgtttgatagtgacatggataaactaatatctgaaaaataccctggtgtacgtcag
atacttgaaaaaaagaatggcctatttcgtaaacatatgatgggaaagagagtggattat
gctgcccgatcagtcatttgccctgacatgtacattcagaccaatgaaattggcattcct
atggtatttgctaccagattgacctatcctcaacccgtcactccttggaatgtccaagaa
ttgaggcaagcagttataaaggggccaaatgagcatcctggggcttccatgattatcaac
gaagatggatctcgcacaatattgagtacaactagccagactcagagggaagccatagct
aagcaactcttaaccccttctactggagcaccaaaaccagggataaaaattgtgtgccgc
catattaagaatggtgatatccttctgctgaaccgacaacccactcttcatagaccctcc
atccaagcccatcgagcaagaatcctgcctggagagaaagttttgaggcttcactatgcc
aactgcaaagcctataatgctgattttgatggtgatgagatgaatgctcattttcctcaa
aatgagctgggccgagctgaagcctatgtattggcctgtacagatgaacagtatctggtt
cctaaggatgggaaaccattggcaggattgattcaagaccatatggtgtctggtactagc
atgaccactcgaggctgtttcttcactagagaacagtatgttgagctggtgtatcaaggg
ctgatggacaaaaagggaaaagtaaagctgctatctccagccattgtaaagccacaatgc
ttatggacaggaaagcaggttgtttctactttgttattaaatgtaattccagaaggtcac
tttccactaaatctgtctgggaaagctaagatcagcggaaaagcctggacaatagcatct
gcctgtagaattcatagatcagatcttgactctatgtgtgaatctcagattcttattaga
aatggagaactgctctgtggggtcttggataaagctcagtatgggagctctgcctatggt
ttagtccactgctgccatgaggtttatgggggtgagactagtggaaagttgctaacagct
ctggctagaatcttcactgcctacctacagttctacaggggttttacaatgggagttgag
gatattttggtcaaatataaggcagaccagaagaggtgcaacgtcattaaggaaagtacc
aactgtggtataaaggctgttagagctgcatttaacctatcccaaacctcttcttgtgag
gaacttcgaagtaaatggcaggatgcccatcttcagaaagatcaaagagattttaacatg
attgatttaaagttcaaagaagaagtcaactgttgcagcaatgagatcaacaaggtgtgc
atgcctcttggacttcaccgaagtttcccagacaataatttgcagctgatggtacagtca
ggagccaaaggttctactgtgaataccatgcagatttcttgcttgctgggccagattgaa
ttagaaggccgaaggcctcctttgatggcatctggaaaatcattgccatgtttccagcct
tatgacttttctcccaaatcaggaggatttgtagctagtagatttcttactggcatcaag
ccttcagaattcttcttccattgtatggctggtagggaaggtttagtggatactgcagtt
aaaaccagccgatcaggataccttcaaaggtgtatcataaaacatttagaagggctgatt
gttcattatgacatgactgtacgagatagtgatggcagtgtggttcagtttctatatgga
gaagatggattggatatccctaagacacagttcttgcaacccaagcaatttcctttcatt
gcagataatcacaaggtgatatggaaatctaagcatttagatgaagttatgccaaaaatg
aatcctcagcaagcatctaaacagtttaaattaatcaagagatggcaagcgaagcatcaa
cagtctttgagaaggaaaggaggctttttgctgttttcgcaagaaatgttggcttatata
aaagctgagatgtctacaggaggatcacttgtatatggccgagatcctgcagctgttaag
ctgttaaatatgtggtatgaactgaatgaaaaaacccggaggaagtatcaaaagagggca
gcaagatgtcctgatcctagcctttcaaactggcggccagatatttattttgcatcagtg
tctgaaacatttgaaaatgaagttaagaatttccttggagagtgggatgctcagaatagg
cttaactatagcaaatcggaactttctttacagagattacaggagcttctctgtttaaaa
tggcaacaatcactctgtgatcctggagaagctgtgggacttcttgctgctcagagtatt
ggagaaccgtccacccagatgaccctgaatacctttcactttgctggaagaggtgaaatg
aatgttacccttggtatcccaaggttgcgggaaattctgatggtagctagtgctaatatc
aaaactcccatgatgagcattcctgttcttaataccaagaaagctcaaaaaagggtgaaa
aggctcaagaaaaagcttagcagagtgtgcttaggtgaggtgttacacaaagttgatatt
gaagaaactttgtgtttggaagggacattaagcaagcatcgcatctacaccatcaggttt
agttttttgccttataaatgctatcaagaagaaaaatgtgtgaagccaagggacatctta
cattttatggagacgagattttttaaaatgttgctggaaacaattaaaaggaagagttta
aaattggcatcttataacactgtcagcactcgaaaagcaattcagaaagatttagaagat
gaggaagaaattggtgcttcacaggaagaccagaatgataatgaagctgaaactgaagaa
gacagatttcctgatagtggaatgactgaaggtgatgctgatgctacagatacaaaaaga
aaggaaaatcaagaagaagaggttgattatgagagtgaggaagatcatgaaatgggtgat
gatgacgatattccagatcgggaaatgactgcaccggatgaacaaaatcctgaggcattg
gaaactcaggataagctttattcttcttcttcttctagtcaaacagctcgaagcaagaga
aaacgatggaatgaaatggcacagcatagaattaatgctgtactggaaagccatgatgct
atagaaaaatatgcatatgacattgataatgaactgtggtgtgaggtttcactaaagctt
tctctgacgaaggagtactttgatcttgcatcacttgttacatctctggcaaatagcact
gtcatccaggagacaatgggaataacacgatgtctcttaaatgaaaccagcaacaagaat
ggagaagtggtgctcactttgcaaacagaagggataaatcttcctgagcttttctactat
tctgatatttttgatatgaataaactttattgcaatgatattcatgcaatggccaacacc
tatgggattgaagctgctttgaaaattcttgagagagagattaaagatgtgtttgctgca
tatggaattgtggttgatcctcgacatctctccttggtgtcagactacatgtgctttgaa
ggtgtttacaaacctttgaatcggtatggaatgcagtccaattcatcccccttgcaacaa
atgacttttgagacaagctacaagtttttgaaagaagcaactatgttgggatcccatgat
gaacttctgtctccttctgcttgcctggtggtaggaaaagtcgtcaagggaggaactggc
ttatttgatcttaagcaacctctaaaataa
DBGET
integrated database retrieval system
