Crotalus tigris (Tiger rattlesnake): 120303322
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Entry
120303322 CDS
T08476
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120303322 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120303322 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120303322 (COL2A1)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120303322 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
120303322
NCBI-ProteinID:
XP_039188696
LinkDB
All DBs
Position
Unknown
AA seq
1423 aa
AA seq
DB search
MFSFVDSRTLVLLATTQVILLAVVNCQNEDIRQPGPKGQKGEPGDIKNVVGPRGPPGPQG
PSGEQGPRGERGEKGEKGVLGPRGRDGEPGTPGNPGPAGPPGPPGPPGLGGNFAAQMAGG
FDEKAGGGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGSPGEPGEPGPGGAMGPRGP
PGPPGKPGEDGEAGKPGKSGERGLPGSQGARGFPGTPGLPGVKGHRGYPGLDGSKGEAGA
LGAKGESGSSGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPSGG
PGFPGAPGAKGEAGPTGARGPEGAQGSRGESGSPGSPGPAGPSGNPGNDGIPGAKGSAGA
PGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGETGPGGPQGAPGP
AGEEGKRGARGEPGAAGPIGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPIGLGGAKGA
PGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGAPGPQGSRGQPGVMGF
PGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGAGGPPGPAGPAGERGEQGAPGPSGF
QGLPGPPGPPGEGGKPGDQGIPGEAGAAGLVGPRGERGFPGERGPAGAQGLAGGRGLPGT
PGTDGPKGAPGPAGPSGAQGPPGLQGMPGERGAGGIPGPKGDRGDAGEKGPEGAPGKDGG
RGLTGPIGPTGPAGPSGEKGESGLPGPAGAAGTRGAPGERGETGPPGPAGFAGPPGADGQ
PGAKGEQGESGQKGDAGSPGPQGPSGAPGPQGPTGVTGPKGGRGAQGPPGATGFPGAAGR
VGPPGPNGNPGSPGPPGASGKDGPKGARGDAGPVGRTGDPGLQGPAGAPGEKGESGEDGP
PGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSSGGPGDRGPPGPVGP
PGLTGPSGEPGREGNPGSDGPPGRDGSPGPKGERGETGAVGSHGAPGSPGAPGPVGPTGK
QGDRGETGPQGPIGPTGLAGARGLPGPQGPRGDKGESGEAGERGLKGHRGFTGLQGLPGP
PGPSGDQGTPGPGGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETGAAGPPGN
PGPPGPPGPPGAGIDMSAFAGLGQTEKGPDPMRYMRSDQAFSNLRQHDVEVDSTLKSLNN
QIESIRNPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMETGESCV
YPKPRSIPRKNWWTSKNKEKKHIWFGESINGGFHLSYGDDNLAPNTANIQMTFLRLLSSE
GSQNLTYHCKNSIAYMDAASGNLKKALLIQGSNDVEMRAEGSSRFTYTALQDGCTKHTGK
WGKTVIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactctagtgctcctggcaactactcaagtaatttta
ttagcagttgtcaattgtcagaatgaggatatacggcaacctggacccaagggtcaaaaa
ggagaacctggtgatatcaagaatgttgtaggaccaagaggccctcctggaccacaggga
ccttcaggtgaacaaggaccaaggggagaacgtggagaaaaaggagaaaagggtgttctg
ggtccacgtggcagagatggtgaacctggtacacctggcaatccagggcccgctgggccc
ccaggacctccaggaccccctggccttggtggaaactttgctgctcagatggctggtgga
tttgatgagaaagcaggtggtggtggtgctcagatgggagtgatgcaaggccctatggga
ccaatgggaccgcgaggtcctccaggaccatcaggatcacctggccctcaaggatttcaa
ggcagccctggggaacccggagaacctggtcctgggggtgcaatgggtccccgtgggcca
cctggaccgcccggaaaaccaggagaggatggtgaagcaggcaaacctggcaagtcagga
gagcgtggattacctggatctcagggtgctcgaggtttccctgggaccccaggccttcct
ggtgtcaaaggccacagaggatatcctggtttagatggctctaaaggagaagctggtgct
ctaggtgctaagggtgaatctggatcttctggggagaatggttctcctggtcccatgggt
ccccgtggcctgccaggtgaaagaggacgtcctggcccatctggtgctgctggtgctcgt
ggtaatgatggtctccctggtccagctggtccaccgggacctgttggcccttctggtggc
ccagggtttccaggggctccaggtgcaaagggtgaagctggtcctactggtgctcgtggc
cctgagggtgcccaaggctctcgaggtgaatctggatcccctggttctcctggacctgca
ggaccttcaggcaaccctggaaatgatgggatccctggtgccaaaggatcagcaggtgct
cctggcattgctggtgctcctggttttcctggcccacgtggaccacctgggccacaaggt
gcaacaggacctttgggtcccaaaggtcaggcgggagagcctggaattgcaggcttcaaa
ggtgaacaaggccccaagggtgaaactggccctgggggaccacaaggagcacctggtcca
gccggcgaagaagggaagagaggagctcgtggtgagccaggagctgcaggaccaattgga
ccacccggagagaggggttcccctggaaatcgtggttttccaggtcaggatggattagct
ggtcccaaaggtgctcctggagaacgtggccctattggtcttgggggagccaaaggggcc
cctggagatcctggacgacctggagaacccggcttgcctggtgcccggggactcactggt
cgtcctggggatgctggtcctcaaggcaaagttggcccatctggtgctccgggtgaagat
ggacggcctggcgctcctggtcctcaaggttctcgtggtcagcctggtgttatgggtttc
ccaggccccaaaggtgctaatggtgaagctggtaaagctggtgagaaggggctacctggt
gctcctggactacgaggtcttcctggcaaagatggcgagacaggagcaggtggaccacca
ggacctgctgggcctgctggagagagaggtgaacagggtgctcctggaccatctggattc
caaggacttccaggccccccaggccctccaggtgaaggtggaaaaccaggtgaccaaggc
attcctggagaggctggtgctgctggtcttgttggtcccagaggtgaacgtggcttccca
ggagaacgtggacctgcaggtgcgcaaggcttggctggtggtcgagggcttcctggtact
cctggtactgatggacccaagggtgcacctggtcctgctgggccttctggtgcccaaggc
cccccaggtctgcagggaatgcctggtgagagaggagctggaggtattcctggaccaaag
ggagacaggggtgatgctggtgagaaaggcccagaaggtgctcctggcaaagatggcggc
cgaggattgactggccctattggtcctactggtcctgctggccctagtggagagaagggc
gaatctggtcttcctggtccagctggagctgctggtactcgtggcgctcctggcgagcgt
ggagaaactggacctcccggccctgcaggatttgctggcccccctggggctgatggccag
cctggtgctaaaggtgagcaaggtgaatctggccagaaaggagacgctggatcccccggt
ccacaagggccatctggtgctcctggtccacagggtcctactggtgtaacaggtccaaaa
ggaggtcgtggtgcacaaggacccccaggtgccactggattccctggtgcagcaggacga
gttggaccaccgggccccaatggtaaccctggttctccaggcccacctggtgcttctgga
aaagatggtcccaagggtgcccgtggtgacgcagggccagttggacgcactggtgatcca
ggtttgcaaggccctgctggtgctccgggagagaagggagaatctggagaagacggtcct
cctggtgcagatggcccacctggacctcagggtttggcgggacagagaggtatagttggt
cttcctggtcagcgaggtgaaagaggctttcctggtctgcctgggccttctggtgagcct
ggtaaacaaggatctagtggaggtccaggagatagaggcccacctggcccagttggtcca
cccggtttgactggtccttctggtgaacctggccgtgagggtaatcctggttcagatggt
cctccaggcagagatggttccccgggaccaaagggtgaacgtggtgagactggtgctgtt
ggaagtcatggtgctcccggctcacccggggctccaggtcctgttggtccaactggcaaa
caaggagacagaggagaaacaggtcctcaaggtcccattggccctactggccttgcagga
gcaaggggcttacctggtccacaaggccctcgtggtgacaaaggtgaatctggagaggca
ggagaacgaggtctgaagggtcaccgaggattcactggcctgcagggtctccctgggcct
cctggtccttctggagatcaaggtacacctggtcctggtggtccttctggtcccaggggt
cccccaggtcctgttggtccctctggcaaagatggctctaatgggatgcctgggcctatc
ggccctcctggccctcgtggtcgtagtggagaaactggtgcagctggtcctcctggcaac
cccggaccccctggtcctcccggcccacctggagctgggattgacatgtcagcctttgct
ggccttggccagactgagaaaggccctgatccaatgcgctacatgcgatccgatcaggct
ttcagcaacttgcggcagcatgatgttgaggtcgactccaccctgaagagtctcaacaac
cagattgaaagcatccgaaaccctgagggcagcaagaagaacccagctcgaacctgtcgt
gacctgaaactatgccaccctgactggaagagcggcgattattggattgaccccaaccag
ggctgcactttggatgccataaaggttttctgcaacatggagactggggagtcctgtgtc
tatccgaagccaaggagcattcccagaaagaattggtggacaagcaagaacaaggagaaa
aagcacatctggtttggagaaagcatcaatggaggctttcatcttagctacggagatgac
aacctggctcctaacacggccaacatccagatgactttcctgcgactcttgtcttctgaa
ggctcccaaaaccttacctaccactgcaagaacagtattgcctacatggatgcagcatct
ggcaaccttaagaaagctctcctgatacagggatccaacgatgtggagatgagagctgag
ggcagtagcaggtttacctacacggccttgcaggatggatgtacgaaacataccggaaag
tgggggaagaccgtcattgagtatcgatctcagaagacttcgcgcctgcccatcattgac
attgcacctatggacattggtggtgccgatcaggaatttggtgttgatattggccccgtg
tgctttttgtaa
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