Crotalus tigris (Tiger rattlesnake): 120304974
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Entry
120304974 CDS
T08476
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120304974 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctig03032
]
120304974 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120304974 (TOPBP1)
DNA replication proteins [BR:
ctig03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120304974 (TOPBP1)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120304974 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
120304974
NCBI-ProteinID:
XP_039192096
LinkDB
All DBs
Position
Unknown
AA seq
1505 aa
AA seq
DB search
MKGSKEPYFVKFIKTAESSEFFFQALESIKEFQSEECLQILDKEAALRIQENDKSLYICD
QFSGIVFNHLQKLGCRIVGPQVVIYCMQNQRCVPKADHPVFNMTMADVTVSCTSLPKETR
EEVHENVQLMGGRVYRDLNVLVTHLIAGEVGSKKYLVAANLKKPILLPTWIKTLWDKSQR
RIIRYTDINMGDFLCPPFLGCTICVTGLSSMDRQEVQRLTTENGGQYTGQLKMNECTHLI
VQEPKGQKYECAKRWNVHCISMQWFFDSIEKGFCQDESMYLIVPSTKQDNAPSTSTPTNQ
ASQPDSRTLSDVSHISNINLNDINETSCSSVLNSRLDPPPDDLNNLNISSLQAHEDLLDG
CRIYLCGFSARKLDKMKKLINSGGAVRFNQLNEDVTHVIVGDCDDELKQFLKKTERRYWP
HAVTVQWLLECFRKGYLIPEEQYAPASYQQVNIPSSEPPFISPKNNMLKKEHVNTVAAAD
TDEDLLSQYVTHDSKVAHFDDHSIDHTVFQDGKEVTVSSLAKSSSVIEGALFSGRKFLIL
GFGKEDESCIRALIEENAGKVLFQENKVIADYAVVPLLGNKVTSTVGDVVTNTWLVMCIE
QQTLIDPQSSPLFIPVPMKEGAIPLQHCVLSFSQFSGAEREFLIYLASQLGARVQEFFVR
RANPKKGMLVSTHLVLKEPDGSKYEAAKKWNLPAITMAWLLESARMGKKAAESKFLIENI
GNKDKQKNLTNSTEEMETSTASSNTPDHPSSVLETGKVTTVTPLDVNRFQSKAFQSVISQ
HIGKNPSPPIGSKVVQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETPGGPNQGNT
NLSTPLSEVIGRNLKLALANSTRQTVALTASPQLKAPSWQREEESKPLVNVVICVSKKLS
KKQSELNAIAASLGADYRWCFDETVTHFIYQGRQNDNSREYKSAKERGIYIVSEHWLLES
AQEYKRLVESLYPHTYNPKMSLNISGVEDDRFSQRLDTVGKDGKSNKNNSLDDDTKKVIV
DQINEVGQKDNEPKGVLTQTLEMRENFQKQLQEIMTATSLAKLQGQRNSLSRNGFENSPT
TPDGPRSVRNGRSRILEALRQSRHGATDVNTEPSQNEQIIWDDPTAREERARLASNLQWP
NSPSQYSEQVQTTAVTPGELSLRKSVSDTEIVEMGINDSTKIDSVEVANLLIRNPETPIK
EDHLIPTPLAPAIAFPLANPPVAPQPKGDVCSIMVTKIDQRDYEEPTKMHRFQLSSLNPQ
ERIDYYQLIEELGGVVLEKQCFDSSCTHTIVGQPLRNEKFLASMAAGKWVLHRSYLEACR
AASSFVKEEDYEWGSNSILSVLTGINIVQKKLAVAAMRWRKTIQRRREENSSAEGAFGGW
RVILNVDPAKESGFKRLLESGSAKVFPAYYPPIFKEVTHFFADLNKLKPEDVRINIREAA
AQGVNCLKPEYIADYLIQEPPPSMENYHLPEATAYLQNSKILGIGFSQKRKAAEEKHTAK
RSRIH
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtagcaaggagccatattttgtgaagtttataaaaactgcagaaagttcagaa
tttttttttcaagcccttgagtccatcaaagaatttcagtcagaagaatgtcttcagatt
cttgataaggaagctgcacttagaatacaagagaatgacaaatccctttatatatgtgat
cagtttagtggcattgtttttaatcatcttcaaaagcttggttgtaggattgtggggcca
caggtggttatctactgtatgcaaaatcaacgatgtgtgccaaaggctgatcatccagta
tttaatatgacaatggctgatgtaacagtatcttgtacaagtcttccaaaggaaacaagg
gaagaagtccatgaaaatgtacagttgatgggtggccgtgtatacagagatcttaatgta
ttagtaactcatcttatagctggagaagttggaagcaaaaaatatttagttgctgctaat
cttaaaaaacccattttgctccccacttggataaaaacattgtgggataaatcacagcgc
aggatcattagatacacagatataaatatgggagactttctgtgtcctccatttcttggt
tgtacaatctgcgtaactggtttaagcagcatggatagacaagaagtccaacgtcttacc
actgagaatggtggtcaatatacagggcaactgaagatgaatgaatgtacacatcttatt
gttcaagaaccaaaaggccagaaatatgaatgtgcaaaaaggtggaatgttcattgtata
tccatgcagtggttttttgacagcattgaaaagggattttgccaggatgaatcaatgtat
ttgatagttcctagcacaaagcaagataatgcaccaagcacttcaactcctacaaatcaa
gctagccagccagacagtcgaacactttctgatgttagtcatatttcaaatatcaaccta
aatgacattaatgagacatcatgtagttctgttttgaatagcagactggatcctccacct
gatgacctgaacaacttgaatattagttctttgcaagcacatgaggatttactggatgga
tgccgaatttatctttgtggctttagtgccagaaaattagataaaatgaaaaagctgatt
aactctggtggtgctgttcgttttaatcaactaaatgaagatgtgacacatgttattgtg
ggagattgtgatgatgaattaaaacaatttttgaagaagacagaacggaggtattggcca
catgctgtgacagtacaatggcttttggaatgctttagaaaaggttatttaatacctgaa
gagcaatatgcccctgcaagttatcaacaagtgaatattccatcttctgaaccacctttc
atctccccaaaaaataatatgttgaagaaagaacatgtgaatactgtggcagctgcagat
accgatgaagatttgctatctcagtatgttactcatgattccaaagtagctcattttgat
gaccacagtattgatcacactgtatttcaagatggaaaagaggtcactgttagttcttta
gcaaagtcttcttcagttattgaaggagccttattcagtggaaggaagtttctcattctt
ggttttggcaaagaagatgaatcttgcataagagctctgattgaagagaatgctgggaag
gttctgttccaggaaaataaagtaattgctgattatgctgtggttcctcttctgggaaac
aaggtcacatcaactgtaggagatgtggttacaaacacatggctggtgatgtgtatagaa
caacagaccctgatagatcctcaatcaagtccacttttcatcccagtgccaatgaaggaa
ggagccatcccattacagcattgtgtgttgtctttcagtcagtttagtggagcagagaga
gagtttttaatatatttggcaagtcagcttggggcaagagttcaggaattctttgtgaga
agagccaacccaaagaaaggaatgctggtcagcactcatttggtgctaaaagagccagat
ggttctaaatatgaagcagcaaagaagtggaatcttcctgccattactatggcttggcta
ttggagtccgctaggatggggaaaaaggctgctgaaagcaaattcctgattgagaatata
ggcaacaaagataaacaaaagaaccttacaaattctacagaagaaatggagacaagtact
gcatcttcaaatacacctgatcatccaagtagtgtccttgaaactggaaaggtaacaaca
gtgacacccctggatgtgaatcgttttcaaagtaaagctttccaaagtgttatttcacaa
catattggtaaaaatcctagccctccaattggaagcaaagtagtacagaaggaaccatct
ctgcatctggacacaccatctaaatttttatctaaagacaaactctttaaaccttctttt
gatgtcaaggatgctttggcagctttggaaactccaggtggtcctaaccagggaaacaca
aatctaagtactcctctttcagaagtcattggcaggaacttaaaactagctttggccaac
agcacacgtcaaaccgttgctctcactgccagtccgcagctaaaagctccaagttggcaa
agggaagaagaatcaaaacctttagtgaatgttgtcatctgtgtgagtaaaaagctgagt
aaaaagcagagtgaattgaatgctattgctgcatctcttggagctgattacaggtggtgt
tttgatgaaactgtaacacatttcatctaccaaggaaggcagaatgataacagccgggaa
tacaaatctgctaaagaaagaggcatatacattgtttcagagcattggctcttggagagt
gcgcaagaatacaaacgattagttgaatctctttatcctcatacatataatcctaaaatg
agtttgaatattagtggtgtggaagatgacaggttctcacaaaggcttgacactgttgga
aaagacgggaaaagcaacaaaaataattcactggatgatgatacaaaaaaagttattgtt
gatcaaataaatgaggttggacaaaaggacaatgaaccaaaaggagttttaacacagaca
ttggaaatgagggaaaactttcagaagcaactccaagaaatcatgactgccacatcatta
gcaaagttgcaaggacaaagaaactccttatctaggaatggttttgagaattctccaaca
actccagatggaccccgttctgttcgtaatggccgcagtagaatcttggaagctttaagg
cagtcacgtcatggagcaactgatgtcaatactgagccatcccagaatgaacagataatt
tgggatgaccctacggcaagagaggagagagcaaggcttgccagtaacttgcagtggcct
aacagtccttcacagtattcagaacaagttcaaactactgcagtgaccccaggagaactt
tcacttagaaagtctgtaagtgatacagaaattgttgaaatggggattaatgattcaacg
aaaattgattcagttgaggttgcaaatcttctaattagaaatccagaaacgccaataaaa
gaagatcacctgatcccaactccattggctcctgctattgcttttccattggcaaatcct
cctgtcgctccccagccaaaaggagatgtatgttctatcatggtcactaaaattgaccaa
agggactatgaagaaccaacaaaaatgcacagatttcagctttcttctcttaatccacag
gaaagaattgattattaccagctaattgaagaactagggggagtggtgttggagaagcaa
tgctttgattcgagctgcacacatacaattgtgggacagcctcttcgcaatgaaaaattc
ttggcatcaatggcagcaggaaaatgggtgcttcatcgttcttatttggaagcatgtcga
gcagcaagcagctttgtaaaggaagaagattatgagtggggaagcaactctatacttagt
gtactgactggaatcaatatagttcagaagaagttagcagttgcagcaatgagatggaga
aagacaatacaacgacggagagaggaaaacagctctgctgagggggcatttggtggttgg
agagttattttgaatgttgacccagccaaggaatcaggcttcaagcgtcttctagaatca
ggaagtgcaaaggtgttccctgcatattatccacctatctttaaagaagttactcatttt
tttgctgatcttaataaactaaaaccagaagatgttagaattaatataagagaagctgca
gctcaaggagtgaattgcctgaagccagaatacattgctgactacctgatacaggaacca
ccaccttcaatggagaactatcatttaccagaagctactgcttatcttcagaacagtaaa
atacttggaattgggttttctcaaaaacgtaaagctgctgaagaaaagcatacagcaaag
aggtccagaattcactga
DBGET
integrated database retrieval system
