Crotalus tigris (Tiger rattlesnake): 120307702
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Entry
120307702 CDS
T08476
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120307702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120307702
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120307702
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
120307702
NCBI-ProteinID:
XP_039198657
LinkDB
All DBs
Position
Unknown
AA seq
1196 aa
AA seq
DB search
MFYSSRPEIKRAMELADVALRKDKSERLGLAICDKPSESEGEEEEEETEQVSDEGDDFDT
VKEIKTRNKRIARRKLSDGKAKKRKIFMDSDTDNEGSDMEFQPDEGSSDENSVEIRDSET
SESETGPEKKSSVKVLTKRSPKQMQGKACKSRQNNLSDTPSREICPESMYKLASYAAPES
FDFRPSINGGGAGGGGGDGNPTVWEHEKIDWLHDGRRKDSHRRRQNDPDYDPSTLFVPED
YLKNCTPGMRKWWELKSQNFDAVIFYKVGKFYELYHMDAVVGVNKLGLVFMKGTWAHSGF
PEMAFDRFANVLVQKGYKVVRIEQMETPEMMEARCKSLVHPTRFDRVVRREICRIISKGT
QTYSILDGDYSETHNKYLLCIKEKIDDSAGLHRTYGVCFVDTTVGKFYVGQFVDDRHCSR
FRTLLAHYTPVQILFEKGNPSAETQKILKGLISFTVQESLIPGSQFWDASKTLKTLIEES
YFQNKENTNSRNTLPAVIRSMTAESDSLGLTPAENSELALSALGSCVFYLKKCIIDKELL
SMANFEEYIPVDVDIVNRTRSNSAFEKTNQRMVLDGVTLANLEILQNATRSSVEGTLLEK
IDTCCTPFGRRLLKQWLCAPLCNPCAINDRLDAVEDLLAEAAKMSDIRDRLKKLPDLERL
LSKIHSIGSSLKNHNHPDNRAILYEEARYSKKKIIDFLSALEGFKIIIEILSILEDTVNG
FKSKILKQIATVKSKNPAGCFPDLKAELEKWDSAFDHNIARRTGVVNPKTGFDSDYDKAL
EDISEIEENLRQYLEIQRKRLGVRAVMYWGAGKNRYQMEIAETAVPRDLPDEYIMKSSRK
GYKRFWTKDIEKMLNEIINAEERRDAAQKDCMKRLFYDFDKTRKDWQTAVECIAVLDVLL
CLARYSQGCDGPLCRPEILLPENIPPFVELKSSRHPCITKIFFGDDFIPNDIVIGLEDKK
TNSRATCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCFVPAESCRLTPVDRVFTRLGASDR
IMSGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAIASAVVKELSENIKCR
TMFSTHYHSLVEDYSHSLSVQLGHMACMVENECEDPSQETITFLYKFVNGACPKSYGFNA
ARLADIPEEVIQKGHKKAKEFEKAVLSMKVFRNLCWIAEGALAARDYLDKQTLLHV
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgttttacagttcaagacctgaaattaaaagagcaatggaactggcagatgttgctttg
agaaaggataaaagtgaacgactaggtctagctatatgtgacaaaccttcagaaagtgaa
ggagaagaagaggaagaagaaacggagcaggtgagtgatgaaggcgatgatttcgacaca
gtaaaggaaataaaaactagaaataaaagaatagctagacgaaagctttctgatggaaaa
gccaaaaagagaaagattttcatggattcagacacagataatgaaggttctgatatggaa
tttcagccagatgaaggtagcagtgatgaaaatagtgttgaaatacgtgacagtgagact
tctgaatctgaaactggccctgaaaagaagagttccgttaaagtactgactaaacgttct
cctaaacaaatgcagggaaaggcatgtaaatctcgccaaaacaacctatctgacacaccc
agtagggaaatctgtcctgagagcatgtataaattagcatcttatgcagctcctgaaagt
tttgattttcgaccaagcattaatggaggaggagccggagggggaggaggagatggcaat
ccaaccgtatgggagcatgaaaaaatagattggcttcatgatggtagaaggaaggatagt
catagaagacgacaaaatgatccagattatgacccaagtactttatttgtgccagaggat
tatcttaaaaactgcactccaggaatgcggaaatggtgggagttgaaaagtcaaaatttc
gatgccgtgattttttataaagttggaaaattttatgagttatatcacatggatgccgtt
gttggtgtaaataagcttggattggtttttatgaaaggcacttgggctcactcaggtttt
ccagaaatggcatttgatagattcgccaatgtcttagtccaaaaaggttataaagttgta
cgaatcgagcagatggagactcctgagatgatggaagcacggtgtaaatctttggttcac
ccaacaagatttgacagagttgtgcgccgagaaatatgcaggataatttccaaaggcaca
cagacctacagtattcttgatggtgactattcagagacccacaacaaatatcttctttgc
ataaaagaaaaaatagatgattctgctggcctgcatcgtacttatggagtttgctttgtt
gatacaacagttggaaagttttatgttggccagtttgtggacgatcgtcattgttctagg
tttagaacacttctggctcattatactcctgtacagatactttttgagaaaggaaaccct
tctgcagaaacacaaaagatacttaaaggtttaatctcttttactgttcaagaaagcttg
attcctggttctcagttctgggatgcatctaaaactttaaaaactctcattgaagaaagt
tattttcagaacaaagagaatacaaatagtagaaacactctgcccgcagtaatcaggtct
atgactgcagaaagtgattcattgggacttactcctgcagaaaacagtgaacttgctctc
tcagctctaggcagttgtgtattctatcttaaaaaatgtattattgacaaggaactttta
tcaatggcaaattttgaagaatacattcctgtggatgttgatatagttaacagaaccaga
tcaaatagtgcttttgagaaaacaaaccagcgaatggtactagatggggtaacactagca
aacctggaaatactacagaatgcaaccaggagttcagtagagggcacattattggaaaaa
attgacacttgttgtacaccttttggaagaagactgctgaagcaatggctctgtgcacca
ttatgtaatccttgtgctattaacgatcgcctggatgcagttgaagacctcttagctgag
gctgctaaaatgtctgatatccgtgaccgtctcaaaaaactcccagatcttgaaaggctt
ttgagcaaaattcacagtattggatcttctcttaagaaccataaccatccagacaatagg
gctattttatatgaggaggctaggtacagtaagaaaaagattatagatttcttgtctgca
ctggaaggatttaaaataataattgaaattctctcaattttggaagatactgttaatggt
tttaagtctaaaatactaaaacaaatagcaacagtgaaatcaaagaatccagcaggctgc
ttcccagacttgaaagcggaacttgaaaaatgggattctgcttttgatcataatatcgca
cggaggacaggtgtggttaatccaaaaactggttttgattctgattacgataaagcatta
gaagatatcagtgaaattgaggaaaatcttcgtcaatatttggaaatacaacgcaaaaga
cttggtgtcagagccgtgatgtattggggagcaggcaaaaaccgttaccaaatggagatt
gcagaaactgctgtgcctcgggatttgcctgatgaatatatcatgaagtctagtagaaag
ggctataaacgtttctggacaaaagacatagagaaaatgttaaatgaaattatcaacgct
gaagaacggagagatgcagcacaaaaagattgtatgaaaagattattctatgactttgat
aaaaccagaaaagattggcaaactgcagtggaatgcatcgctgttctagatgttttgtta
tgccttgcccgctatagtcagggatgtgatggaccattgtgccgcccagaaatcttgttg
ccagaaaacatcccaccttttgtggagctcaaaagctcacgtcatccatgcattacaaaa
atattctttggagatgatttcattcctaatgatattgtaataggcttagaggataaaaaa
acaaacagcagagctacttgtgtccttgtgactggtccaaacatgggaggaaaatctacg
ctcatgagacaggctggtctcttggtaataatggctcagttgggatgctttgtacctgct
gaatcttgcaggcttactcctgttgatagagtgttcactagactaggagcttcagataga
attatgtcaggagagagtacgttctttgttgagcttagtgagacttcgagtatactgcaa
catgcaacagagcattcccttgttcttatggatgagctagggagaggaacagcgactttt
gatggaactgctattgctagtgcggttgtcaaagaactttcagagaatattaagtgtcgt
acaatgttttcaacgcattatcattctttagtagaagattattctcacagtctctctgta
caattgggacacatggcttgtatggtagaaaatgagtgtgaagatcctagtcaagaaacc
atcacattcctttataaatttgttaatggggcttgccctaaaagttacggatttaatgct
gcaaggcttgctgacattccagaagaagtgattcagaaaggccacaaaaaggcaaaagag
tttgaaaaagctgttctttcaatgaaagtatttaggaatctttgttggatagctgaagga
gcattagcagccagagattatcttgacaaacaaactctgcttcatgtttga
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