Crotalus tigris (Tiger rattlesnake): 120308219
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Entry
120308219 CDS
T08476
Symbol
LSM8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03018
RNA degradation
ctig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120308219 (LSM8)
09123 Folding, sorting and degradation
03018 RNA degradation
120308219 (LSM8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120308219 (LSM8)
03041 Spliceosome [BR:
ctig03041
]
120308219 (LSM8)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120308219 (LSM8)
mRNA degradation factors
5'-3' decay
Lsm complex
120308219 (LSM8)
Spliceosome [BR:
ctig03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120308219 (LSM8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
120308219
NCBI-ProteinID:
XP_039199900
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacctcggctttggaaaactatatcaaccgtactgttgctgtgattacttcagatggt
cgaatgattgtgggaactctcaaggggtttgatcagacaatcaatttgattttggatgag
agccatgaaagagtattcagttcttcacaaggagtggaacaagtagttttggggttatac
attgtaagaggagataatgtagctgtaattggagaaatagatgaagaaacagattcagcc
cttgacttgggaaatattcgagcagaacctttgaactcagttgtacattga
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integrated database retrieval system
