Crotalus tigris (Tiger rattlesnake): 120308306
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Entry
120308306 CDS
T08476
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120308306 (COL18A1)
00535 Proteoglycans [BR:
ctig00535
]
120308306 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120308306 (COL18A1)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120308306 (COL18A1)
Proteoglycans [BR:
ctig00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120308306 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120308306 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
DUF1554
Motif
Other DBs
NCBI-GeneID:
120308306
NCBI-ProteinID:
XP_039200129
LinkDB
All DBs
Position
Unknown
AA seq
1857 aa
AA seq
DB search
MARAIVNAWLLLVLFCCLANAQGWRNWFWRDSGETTLSPTKADEAEDETSQDLSTPAATI
NPNALFENTTDPEPRGKVGTIFTLKQPDFTATLPVPAATSPVQEEGRERNITGVGVEILS
VAEGLQNLVQLLEEKTTNRTERTKVSATAETSTSPAPVAEPGSTHNITANLTGDIQTSLE
TKKPEGGATKLARLWNKDFALLWNKTRIFPKKPGKPRQGSASFSFSPDGHFSGTMLVFQE
SPEAGQEVAFTPATRATWGIFSKKQGILPTAKALKLQESHTNSSSSGSSSGSSSLHAGMP
SKVVGTLDNWVLPYVTNPSQPASKGSGAHLSFKSHPFFKHFGIGVAHAKTNHSRGSVSNS
NATNVMDFPSANNSDSLEFLLTYAVQRSNSSSGLPSFLPGLTPSAGRCLPLPTKLSYCNH
LGTKHFRVPNYLHHGSEEEVWAALHEWEGLLKSRCHRYLEWFLCLLLVPGCNASLPVTPP
PCRGFCEALKDLCWTHWKEGHLPISCESLPEEDGPYSCVFVNVLAENFSREVGLLELIGD
PPPDQITKIYGPDKSPAYVFRPDANAGQVARYHLPSPFYRDFSLLFYIQATSDNAGVLFA
LTDASQSIIYVGVKLSEVKHGKQQIIFYYTEPGSQNSNVAATFTVPSLVNLWTRFALSVR
DYNVVLYMDCEEFKMVHLERSSGKIELEEGAGLFVGQAGGADPDKYQGIIVELKIKDNPW
AAGYQCVEEDDDCDTCGGSGSGLDIKQPSSEKESVIPLLPKLPVPPPVTSPDLAKKPVQL
EEAEYTVSPPHVPASGTKGEKGDPGEKGDRGPKGDPGAGVLSTNGDKGEKGEKGELGVKG
SAGFGYPGSKGQKGEPGIQGLPGPIGPPGPPGTIMRHSDGSTVQQPGAPLGPPGKDGQPG
KDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLRGEKGEPGIGARGPPGPPGPPGKPGLSSK
LDKLTFIDMEGSGFGSELETLRGPRGPPGPPGPPGVPGLPGQPGRFGTNGTDLPGPPGLP
GVPGRNGNPGIAGPPGPPGPPGKDGMPGKPGEKGAPGESGEVGFPGAPGPKGNPGVPGSP
GVPGELGLAGLPGPMGPRGLPGPPGPGIAAEFVDMEGSGFPLVSGGPGARGPEGPPGLPG
LPGLPGPPGPKGDEGIIGLPGLPGEKGYPGLPGLDGRPGLEGFPGPQGQKGEEGSPGPKG
EKGQDGIGLPGPPGPPGQAVYLSGEDKTVPVSPGPEGPKGEKGDSGTPGLQGYPGLKGEK
GEPGVISRSDGTIIAKAEKGEAGPRGPMGPAGSPGRYGRKGEIGFPGRPGRPGMNGLKGE
KGDPADVSGALGLREGPPGPPGPPGPPGPPGPPVPVYENNAFGDLGPPGPPGLPGYHGQK
GEKGEQGLPGPPGQFPYDLSRFSSAFKGERGDKGDHGMKGEKGEPGGGSSAAGPPGPQGY
PGLPGPKGESIRGLPGPPGPQGPPGASFEGRPGPQGAPGPPGPPGPPSFPGPHRQHISIP
GPPGPPGPPGPPGGSDPPSLGVRILATYQNLMSRAHEVPEGQLLFIREREELYIRVHNGF
RKILLEERISIPGSGLDNEVYERSSSIHYSHGGTASSGSHRPFQPHLPVHARPEYSAYST
AKPWRGDESAVDSRRLPEQPAVHPPHQGAQSQQESLDHFFPNNRQTETAPLAVHTHHNFQ
PALHLIALNSPQSGSMRGIRGADFQCFQQARQVGLSGTFRAFLSSRLQDLYTIVRRADRS
TVPIVNLRDEVLFNNWEGLFSDAEAPFRTGVRILSFDGRDVLRDSAWPQKYVWHGSDSKG
RRLTESYCETWRTDDTVVTGQASSLASGKLLEQKSNSCRNAFVVLCIENSFMTSSKK
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagcaatagtcaatgcttggcttctgctggtgctcttctgctgcttagccaat
gctcagggctggaggaattggttttggagagattcaggagaaaccacgctgtctcccacg
aaagctgacgaggctgaagatgagacaagccaggacctttccacacctgcagctaccatc
aacccaaatgccctctttgaaaatactactgatcctgagcccagggggaaagtggggacc
atatttaccctgaagcaaccagactttactgcaaccttaccagtccctgcagcaacatcg
cctgtccaggaagaaggcagagaaagaaatattacaggagtgggagtggagatcctcagc
gtggctgaaggccttcagaatttggttcagcttttggaggaaaagacaaccaacaggaca
gagaggaccaaggtatctgccacagctgagaccagcacatcacctgcccctgttgcagag
ccagggagtacccacaacattactgctaacttaacaggcgacatccagacctccctggaa
actaagaagccagaggggggggcaacaaagctcgctcgtctgtggaacaaagacttcgct
cttctgtggaacaagacacgcatcttcccgaagaaacctgggaagccacggcaaggtagt
gcctctttctcattttcacctgatggtcatttcagtggcaccatgttggtttttcaagaa
tctccagaagcggggcaagaagttgctttcaccccagcaacaagggcaacctggggcatt
ttctcgaaaaaacaagggattttgcctactgcaaaagctttgaaattgcaggaatcccac
accaatagcagcagtagtggcagcagcagcggcagcagcagcttgcatgcaggaatgcct
tccaaggtggtgggtactttagacaactgggtgctgccttatgttacaaatcccagccag
cctgcctccaaaggcagtggagcacacctcagctttaaaagccaccccttctttaaacat
tttgggataggagtagctcatgcaaaaacaaaccattctagaggttcagtatctaattcc
aatgcaactaatgttatggatttcccctctgccaataactctgactctcttgagtttcta
ctaacctacgctgtgcaacgtagcaatagcagttcagggcttccttccttcttacctgga
ttgactccatcagctggccggtgcttgcccttaccgaccaagttgtcgtattgcaaccac
ctgggcacgaagcatttccgagtgccgaattatttgcaccatggcagcgaggaggaagtt
tgggctgctttgcatgagtgggaggggcttcttaaatctcggtgtcaccgctacttggag
tggtttctctgcttgctactggtacctgggtgcaatgcttctctcccggtcacaccaccg
ccctgccggggattttgtgaggccctgaaagatctgtgttggactcactggaaagagggg
caccttccaatatcctgtgaatctctcccagaggaggacggtccatattcatgtgtattt
gtaaatgttttagcagaaaatttcagcagagaagttggtctcttagagttgattggagat
cctccaccagaccagataaccaaaatctatggcccagacaaaagtcctgcctacgtgttt
agaccggatgctaacgcaggacaagtggcacggtaccacctcccaagccccttttacaga
gacttctcactcttgttctacattcaagccacttcagacaacgcaggggtgctttttgct
cttacggatgcctcccagtcaatcatctatgttggtgtgaagctttctgaggtgaaacat
ggaaaacagcaaatcatattctactatacggagcctggttctcaaaattccaatgttgca
gccacatttactgtcccttccctggtcaatctgtggactcgctttgccctcagtgtgcgg
gattacaatgtggtgctttatatggactgtgaagaatttaagatggttcatcttgagagg
tcatctggtaagatagagctggaagaaggagcaggactttttgtgggacaagctggaggt
gcagatcctgataaataccagggcatcattgtagaattaaaaataaaagataatccctgg
gctgctggttaccagtgtgttgaagaagatgatgactgtgatacgtgtggtggtagtgga
agtggattagacataaagcaaccatcttccgaaaaggaaagcgtgattcctctgttacca
aaactgccagtgcccccacctgttacttcccctgaccttgccaaaaaacctgtgcaatta
gaggaggctgaatatactgtgagtccaccacatgttcctgcaagtggaaccaaaggtgaa
aagggagaccctggagagaaaggggaccgtggccccaaaggagatcctggggctggtgtt
ttgtcaaccaatggtgataaaggagaaaagggagaaaagggggagctgggtgtaaaggga
agtgcaggctttggatatccaggctctaaaggacagaaaggtgagcctggtattcaaggg
cttcctggtccaattgggcccccaggacctcctggaaccatcatgaggcactctgatggc
tctactgttcagcaaccaggagccccactaggacctcctggaaaagatggtcaacctgga
aaggatggagagcctggagatcctggtgaagatggtaaaccaggtgatgttggtccccaa
ggattccctggaactccgggtgagcctggcctaagaggcgaaaagggagaaccaggtatt
ggtgcaagaggtcctcctgggcccccaggcccacctgggaaacctggattgagttccaaa
ctggataagttgacatttattgatatggaggggtctggttttggaagtgagttggagact
ttgcggggtcccagaggaccacctgggcctccaggccctcctggtgtacctggtttacca
ggacaacctgggagatttgggacaaatggcactgaccttccaggacccccaggcctccct
ggagttccagggagaaatggcaacccaggaatagcaggacctccgggcccacctgggcct
ccaggaaaagatggcatgcctggtaaacctggagaaaaaggagcaccgggagaatcaggt
gaagtgggcttccctggagcacctggaccaaagggcaacccgggagtgccaggatcgcca
ggagtaccaggtgaacttggtctggcgggccttcctgggccgatgggaccacgtggattg
ccaggaccccctgggccaggcattgcggcagaatttgtcgacatggagggctcaggattc
ccccttgtttctggtggtcctggagctcgtgggccagaaggtcctccggggcttccagga
ctcccaggacttccggggcctccaggacccaagggagatgagggcatcattggtctccca
ggtttgccaggcgaaaagggatatcctggcttgccaggattagatggtcgccctggatta
gaaggcttcccaggaccacaaggacaaaagggagaagaaggaagcccagggcctaaaggt
gaaaagggtcaagatggaataggacttcctggccctccaggtcctccaggacaagccgta
tacctgtccggtgaagataaaactgtgcctgtttcgccaggcccagagggcccaaaggga
gaaaaaggtgactcaggaactccaggtttacaaggctatcctggacttaagggtgaaaaa
ggagagccaggagttatatctaggtctgatggaacaatcatagcaaaagcagaaaagggt
gaagcaggcccaaggggacctatgggaccagcagggtcacctgggcgatatggacggaag
ggagaaattggctttcctggaagacctggccggcctggtatgaatggactgaagggagaa
aaaggtgatccagcagacgtaagcggagcgctgggcttaagagagggtcctcctggcccc
cctgggcctccaggccccccaggccccccaggccccccagtacctgtttatgaaaataat
gcatttggtgatttgggccctccaggacctccaggattgcctgggtaccatggtcagaag
ggagaaaaaggtgaacagggtcttccgggtccaccaggccagttcccttatgacctcagc
agattcagctccgccttcaagggagaaagaggggacaaaggtgatcatgggatgaaaggt
gaaaagggtgaaccaggtggtggatcaagtgctgctgggcctcctggtccccaagggtat
cctggtcttccgggccctaaaggtgagagtatcaggggcctacctggccctccaggcccc
caaggacctccaggggcaagttttgaaggacgtccaggccctcaaggcgctcctggccct
cctggccctccgggacccccttctttcccaggtccccacaggcaacatatcagtattcca
ggaccaccaggtcctccgggaccgccaggacctccaggcggtagtgacccaccttctttg
ggggtacggattttagcaacgtaccagaacctgatgagcagagctcatgaggttccggaa
gggcagctccttttcatccgagagagagaagagctctacatccgtgtccacaatggcttc
agaaaaatccttctggaggaaagaatatccattcctggctctggactggacaatgaagtc
tatgaaaggtcttctagcatccactactctcatggagggacagcctcctctggatcccat
cgtccatttcagccacacttaccagtacatgcacgtccagaatatagtgcttattctact
gccaagccatggagaggggacgagagtgctgttgactcacgccgccttcctgagcaacct
gccgtccacccacctcaccagggagcacaatctcagcaagaatccttggaccatttcttt
cccaacaaccgccagactgaaacggctcctttggcagttcacacacatcacaacttccag
cctgctttgcatcttatagccctgaacagtccccagagcggcagcatgcgaggcatccga
ggagctgatttccaatgtttccagcaagctcggcaggttggactgtctggcactttccga
gcattcctgtcctctcggctgcaagatctctacaccatagtgcgcagagcagacaggagt
acagtgccaattgtcaatctcagggatgaagtgttgtttaataactgggagggcctcttc
tcggatgctgaagctccattcagaactggggttcgcatcctctcctttgatggaagggat
gtcctgagagactctgcctggcctcagaagtatgtgtggcatggctccgattccaagggg
cggcgattaacagagagctactgtgagacatggcggacagatgacaccgtggtgactggc
caggcttcctcgctggcatcaggcaagctgctcgaacagaagagcaacagctgcagaaac
gcctttgtcgtcctttgcatcgaaaacagcttcatgacctcttccaagaaatag
DBGET
integrated database retrieval system
