Crotalus tigris (Tiger rattlesnake): 120309453
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Entry
120309453 CDS
T08476
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120309453 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120309453 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120309453 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctig00535
]
120309453 (COL9A1)
Proteoglycans [BR:
ctig00535
]
Extracellular matrix (ECM) proteoglycans
Others
120309453 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120309453
NCBI-ProteinID:
XP_039202654
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MKNGWQYQFLLSVSCFLEILTLVTVQGQTRFPITFSSNMRMDLCPRTKIGQDDLPGYDLI
SQFQLDNAASRGIIQRLEGSTSLQVAYKLGTKADFRIPTRSLYPQGLPDQYSILTTFRMT
GNTIRKSWSLWQVLDSSGKEQVGLKLNGQAKCLEFSYKGIDGSLQTVSFLDLPYLFDSLW
HKVMVGIDKNSATLYIDCAMIQTLPIKPRGKINIDGFTTLGKLKNNPQISVPFEIQWLMI
HCDPRRPQRETCSELTIRSSISQTIVKRGPPGPEGPPGPPGSPGVPGIDGIDGDRGANGP
PGRPGPDGDAGKPGVPGLPGIPGADGLTGPDGSPGPAGPKGQKGEVGLPGGRGLPGKGTP
GPPGPPGIGGLPGEVGRVGPPGDPGRRGPAGVPGPPGPRGTVSHHGGDPLCPNTCTPGHP
GFAGMMGMKGHKGAKGESGEPGKQGFKGEEGEQGRIGDIGDLGPPGPQGLRGFIGIMGPK
GDKGARGFDGEPGPQGLPGAAGDRGPRGSLGETGPEGEKGPQGIRGITGLPGPKGETGLP
GVNGREGIPAMPGAKGEQGKPGPPGDTGIQGIPGLAGSAGAKGVAGPKGDVGSPGKPGLM
GNSGKPGEQGPQGEPGSLGPKGPSGSRGEPGPAGPPGSPGKMGAEGDTGLPGLPGPPGLP
GAKGHRGSAGGRGPKGAQGPAGGEGESGQRGDLGDGGVPGPKGSVGNPGEAGSRGPEGNR
GMPGVEGLRGPLGPRGLQGEQGLPGLPGSQGPAGREPTDLHIKQVCMRVIQEQFAQMAAS
LRRPEFGDPGIPGPPGPPGSPGLPGQSGFPGQAGSRGSPGLKGPPGDTGPKGPKGDTGEK
GERGLPGQGPKGLPGTTGLPGEPGKPSYGTDGRDGERGPAGAAGSPGVPGPTGPPGPPGF
CEPSACTMEAGLQGGPNVKGP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatggctggcagtatcaatttctcttgtctgtgagttgctttctggagattttg
acattggttactgttcaagggcaaacaagatttccaataacattcagttccaacatgagg
atggacctctgcccaagaaccaagattggccaggatgatctaccaggttatgacttaatt
tcacaattccagcttgataacgctgcttccagaggcattatccaacgtctagagggttcc
acatctttacaagttgcttataaattaggtaccaaagcagacttcaggattcctactaga
tccttgtatcctcaaggactacctgatcaatactccattctgactacttttcggatgacg
gggaatacaattcggaaatcctggagcctatggcaagttctagattcctctggaaaagag
caagttggactgaagcttaatgggcaagccaaatgtcttgaattctcatataaaggaatt
gatggaagtctccagacagtttcatttttggatttaccttatctttttgattccctgtgg
cataaagttatggtcggtatagacaagaattctgctacactttatattgactgtgctatg
atacaaacattacccataaaaccaagggggaagatcaatattgatggctttaccacattg
ggaaaactgaaaaataatcctcaaatttcagttccgtttgagatccagtggctgatgatt
cattgtgatcctcggcgtcctcaaagggaaacatgcagtgaactcaccatcaggagctcg
ataagtcagacaatcgtaaagagaggccctccgggtccagaaggcccccctggcccccca
ggctccccaggtgttcctggcattgatggcatagatggagacagaggtgctaatggcccc
ccaggtcgtccaggtccagatggtgatgctggaaaaccaggtgtccctggattgccagga
ataccaggagctgatggattgacaggacctgatggatcaccaggtccagctggtccaaaa
ggacaaaagggtgaagtgggcttgcctggaggccgtggacttcctggaaagggaactcct
ggaccacctggtcctcctggtataggaggacttcctggagaagtgggaagagttgggcca
cctggtgatcctggaaggagaggtcctgcaggagtgccgggacctccagggccgagggga
acagttagccaccatggtggagatccgctgtgtccaaatacttgcacacctggccatcca
ggatttgctggaatgatgggcatgaagggtcacaaaggagcaaaaggtgagagtggtgaa
ccaggaaagcaaggctttaagggagaagaaggtgaacaaggacgaataggtgacattgga
gatctggggcctccaggacctcaagggttaagaggcttcattggtattatgggccctaaa
ggtgataaaggtgctcgtggttttgatggagagccggggcctcaaggtcttcctggggca
gctggtgatcggggaccaagaggttcactgggagagacaggccccgaaggagagaagggt
ccacaaggcattagaggaattactggacttcctgggcccaaaggagaaactggcttacct
ggagttaatggccgtgaaggcatacctgccatgccaggagcaaagggtgaacaaggaaaa
cctggacctccaggtgatacaggcattcaaggaatccccggcttagctggctctgctgga
gcaaaaggtgttgctggcccaaagggtgatgttggttctcctgggaaacctggcttgatg
ggaaattcgggcaaacccggagaacaaggaccacaaggagaaccaggatcactgggaccc
aaaggaccatcaggtagcagaggtgagccaggtcctgccggtcctccagggtcaccaggt
aaaatgggtgcagaaggagacactggactgccaggtttacctgggcctccgggactgcca
ggtgctaaaggccataggggttcagctggtgggcgagggccaaaaggagcccaaggacct
gctgggggagaaggagagtctggacaaagaggcgatcttggtgacgggggtgtgccaggc
cctaaaggatctgttgggaatcctggtgaagctggttcacgtgggccagaaggaaaccgt
ggcatgcctggcgtagaaggacttcgtgggccgctcggcccccgtggtttgcaaggggaa
caagggcttccaggactgcctggcagccagggaccagcgggcagagagccgactgatctg
catattaaacaggtttgcatgagagtaatacaagaacaatttgcacagatggctgctagt
cttcggaggcctgaatttggggatcctggcatcccaggcccacctggcccaccaggctcc
cctggacttccgggacaaagtggcttcccaggacaagctggatcccgggggtcgcctggt
cttaaaggccctcccggtgacactgggccgaaaggtcccaaaggggacacaggtgaaaag
ggggagagaggactcccaggtcaagggcccaaaggcttgccaggaacaacaggactccct
ggagaacccggcaagcccagttatggcactgatgggcgagatggtgagagaggcccggct
ggagccgctggatcccctggtgttccaggtcctactggccctccaggtcctcctggtttt
tgtgaaccatcagcttgtaccatggaagctggattacaaggagggccgaatgtgaaaggg
ccatga
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