Crotalus tigris (Tiger rattlesnake): 120309778
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Entry
120309778 CDS
T08476
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03030
DNA replication
ctig03410
Base excision repair
ctig03420
Nucleotide excision repair
ctig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120309778 (RFC1)
03410 Base excision repair
120309778 (RFC1)
03420 Nucleotide excision repair
120309778 (RFC1)
03430 Mismatch repair
120309778 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctig03032
]
120309778 (RFC1)
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120309778 (RFC1)
DNA replication proteins [BR:
ctig03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120309778 (RFC1)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120309778 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
AAA_14
Zeta_toxin
AAA_30
AAA_19
AAA_16
RuvB_N
nSTAND3
AAA_5
AAA_33
AAA_18
Rad17
NPHP3_N
AAA_17
Viral_helicase1
RNA_helicase
AAA_7
NTPase_1
Motif
Other DBs
NCBI-GeneID:
120309778
NCBI-ProteinID:
XP_039203265
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MDIRKFFGVVNPGQKPECGLVRKEKSQNKERNAGVTSTLKESKVKSSSHEGDFKQKQVNK
KKRIIYDSDSEEEVPLIKKSKPPERTLPSKPTKLLKKDPVVYVSETDEDEDFVKKKDPPK
VKQFETSVKINPGTTGISQPAPKPKVKSKPLSPVKLTPTSVIDYFGTASVQRSEKKLVSS
KRKEPWPSKDSTINDEAIAKELQLEEKSKWERQLHEDEEFAQTLAMLDETPRKKKPRKEE
GQQSKSGEREKNNQAHKGKPTVSALDSQPHSAKDQIQSESVLHPESSATKEEVDWGTTGG
SSKASSRLTPLKPKAGAIKTENGTSKGESLKKEMVTPAGKTISPKIKTPTKVKVSPEQPK
SISPEDSAEKKRTNYTAYRSFLNREGPKALGSKEIPQGGENCLEGMTFVITGVLESIERD
EAKSLIERYGGKVTGNISKKTNYLVKGRDCGVSKCEKASALGTKIIDEDGLFNLIRNTPG
KRSKYEIAAETEAKKTKTETKAEKKKVSPAKLDSNCRKKTSLVEKSDSFRSVKQESGTVR
RGLDFEQKLQEEEKTVPAKEKSSVRESNKNRGEVLLWVDKYKPTSIKAIIGQQSEQSCAQ
KLLRWLKNWQKNSSEDQQVKSGKFGRKDDGAQSKAALLSGAPGVGKTTTASLVCEELGLS
YVELNASDTRSKNSLKEVVAESLNNTSIKGFCSGTSRSVSAKHVLIMDEVDGMAGNEDRG
GIQELIDLIKHTKVPIICMCNDRNHPKIRSLAHYCFDLRFPRPRVEQIKGAMMSIAFKEG
LKIPPPAMSELILAANQDIRQVLHNLSLWCARDKTLTYDGVKEDAGKAKKDIKLGPFDVV
RKVFAKAEEASHMSLIDKADLFFHDYSLGPLFVQENYVHVKPAAARNNVAKELILLSKTA
DSICDGDLVDRQIRTRQNWSLLPTQAIYSSVLPGELMRGYMQEFPSFPSWLGKFSSTGKH
DRIVQELSRHMSLRTHASKRAVNLDYLSYLRDAVVRPLTCQGSEGVRDAVAFMDSYCLLR
EDVENLMEITSWAGKPSPFSNLDSKVKSAFTRAYNKVAHLTPYSLQMAPKKRRGGSVDAD
LNEELESNEAEPETEQGSLESDAMIKKKTKAAKPPTTERKEEKKKGKSKKKS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggatatccgtaaattctttggagttgtaaacccaggacagaagcctgaatgtggcctt
gtgagaaaggaaaaatcccagaataaagagaggaatgccggggtaacgtcgacactgaag
gaaagcaaggtgaaaagctcgtctcacgaaggtgatttcaagcaaaaacaggtgaacaag
aaaaagaggatcatctatgattcagattcggaagaggaggtgccgttaataaaaaaatcg
aagccgccagagagaacgttgccttcaaaacctactaagctgctaaagaaggaccccgta
gtttacgtttcagaaacagatgaagacgaggactttgtgaagaagaaagacccccccaaa
gtgaaacagtttgagacgtcggtgaagattaatccaggaacgacgggaatatcccagccg
gctcccaaaccaaaagtcaaaagcaaacccttatctccggtgaaactgacgccgacatct
gtcattgattactttgggactgccagcgttcaacggtcggagaagaagctggtatcaagc
aaacgaaaagaaccgtggccaagcaaggattccaccatcaatgatgaggctatcgctaaa
gaattacagttggaagagaagtctaagtgggaaagacaattgcacgaagatgaagaattt
gcacaaacgttggctatgctggatgagacacccagaaagaaaaagcctcgaaaagaggaa
ggtcaacagtcaaaatcgggggaaagagaaaaaaataaccaggctcacaaagggaaaccc
acagtttccgctttagattctcaacctcattccgcaaaggatcagattcagtcagagagt
gttctccacccagaatcttctgcgacgaaggaggaggtggattgggggactacagggggg
tcgtcgaaggcttcctccaggttaactccactcaagccaaaagccggagctatcaaaacc
gaaaatgggacctccaaaggagagagcctcaagaaagaaatggtaactccagccgggaaa
acaatttcgcccaaaatcaagacacctacaaaggtgaaggtttctcctgaacaacccaag
tccatcagtcccgaggactcggcggaaaagaagcggaccaattacacggcctacagaagc
ttcctcaaccgggaaggtccgaaggccctcggctcaaaagaaataccccaaggcggtgaa
aattgcctggaaggcatgacgtttgtgatcaccggagtcctggaatctattgaacgcgat
gaggccaagtctctgattgagcggtacggggggaaagtcactggaaacatcagcaagaag
acaaattaccttgttaaaggccgagactgtggcgtatccaagtgtgaaaaggcatcagct
ttaggaacgaagattattgatgaagacgggctgttcaacctgatacgaaatactccaggg
aagaggtccaagtatgaaatagcagctgaaacagaggccaagaaaacaaaaacagaaacg
aaagccgaaaagaagaaagtcagccccgcaaagctggactccaactgccgcaagaaaacc
tccctggtggaaaagtcagactctttcagatctgtcaaacaggaatccgggacagtaagg
agagggctggattttgagcagaaactccaggaggaggagaagacagttcccgccaaggaa
aaaagctcagttcgcgaatcgaataaaaacagaggcgaagtgttactgtgggtggacaaa
tacaagcctacatctatcaaagccatcattgggcagcaaagtgagcagagctgcgctcag
aaactcctccgttggcttaaaaactggcagaagaattcttcggaagaccaacaggtcaaa
tctgggaagtttggaaggaaagacgatggcgctcagtccaaagcagctttgctttccggg
gccccgggagtaggcaaaaccacaacggcatcgttagtttgtgaggaactcggtttgagc
tacgtggagttgaatgcgagtgacacgcgcagcaagaacagcctgaaggaggtggtggct
gaatctctgaataacaccagcatcaaaggattctgctcagggacgtcacgctccgtcagt
gcaaaacacgtcctcataatggacgaggtcgacgggatggctggcaacgaggacagaggt
gggatacaggagctaatagatctgattaagcacacaaaagttccaatcatttgcatgtgt
aacgatcggaaccatcccaagatccgttctctggcccactactgttttgaccttcgtttc
ccgaggccgagggtggagcagatcaagggcgccatgatgtccatcgctttcaaagaagga
ttaaagattccaccgccggcaatgagcgaactcattctggcagctaatcaggacatcaga
caagtattgcataatctcagcctgtggtgcgcaagagacaaaaccttgacttacgacggt
gtgaaagaagacgccggcaaagccaaaaaggatattaagctggggccttttgatgtggtg
aggaaggtttttgccaaggcagaagaggcttctcacatgtctctcatagacaaagcagac
ctgttcttccacgattattccctgggacctctgtttgtccaagagaactacgtccacgtc
aagcctgctgccgccaggaacaacgtggcgaaagaactcatcttacttagcaaaacggcg
gacagcatttgcgacggcgatttagtcgaccgccagattcgcacgcggcaaaactggagc
cttttacccacgcaggccatttattcgagtgtcctgcccggggagctgatgagaggctac
atgcaggagtttccgagtttcccaagctggttgggaaaattttcatccactgggaagcac
gaccgcatcgtacaggagctctctaggcacatgagtctcagaacgcacgcaagtaagagg
gcagtaaacctggactatctctcctatctgcgcgatgccgttgtgcgaccgttgacttgc
caaggctcggaaggggtccgggacgctgtcgccttcatggattcttactgcttgttgagg
gaagatgtggaaaacctcatggaaatcaccagctgggccgggaaacccagcccattttcc
aatttggattccaaggtgaaatcggcgttcacccgcgcctacaataaagttgcacacctt
accccctactccttgcaaatggcaccgaagaagagacgaggggggtcggtggatgcggac
ctgaacgaagagctggaatctaatgaggccgagcccgaaaccgagcaaggaagcctcgaa
agcgatgcaatgattaagaaaaagaccaaagctgccaagccaccaacaacagaaagaaag
gaagagaagaaaaaaggaaaatcaaagaaaaaaagctaa
DBGET
integrated database retrieval system
