Crotalus tigris (Tiger rattlesnake): 120310050
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Entry
120310050 CDS
T08476
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120310050 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctig03041
]
120310050 (SF3B1)
03036 Chromosome and associated proteins [BR:
ctig03036
]
120310050 (SF3B1)
Spliceosome [BR:
ctig03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120310050 (SF3B1)
Complex B
120310050 (SF3B1)
Complex C
U2 SnRNP specific factors
120310050 (SF3B1)
Chromosome and associated proteins [BR:
ctig03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120310050 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
120310050
NCBI-ProteinID:
XP_039203906
LinkDB
All DBs
Position
Unknown
AA seq
1302 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPSGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERD
TPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGT
PAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYV
PIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDV
DESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSP
TLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAK
AAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARH
TGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIE
SFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDE
EMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELAN
KVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQE
QTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVM
KTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTP
ILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFG
YIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELN
VQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGF
GCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVR
DVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaaggc
aaaaaagctgcacttgatgaagctcaaggagttggccttgattctacagggtattatgat
caagagatctatggtggaagtgacagcaggtttgctggatatgtaacttcaattgcagca
actgaacttgaagatgatgacgacgactattcttctacaagtttgcttggtcagaagaag
cctgggtatcatgcaccggtggcattacttaatgacataccacagtcaactgaacagtat
gatccatttgctgaacatcgtccacaaaagattgccgatagggaagatgaatacaaaaat
cggaggcggatgatgattatttcccctgaacgtcttgatccttttgcagatggtgggaag
acacctgatcctaaaatgaatgctagaacatacatggatgttatgcgtgaacaacattta
acaaaagaagagagagaaattcgacagcaactagcagaaaaggctaaagctggtgaactt
aaagtcgtcaatggtgctgcatcccagccaccatcaaaacgcaaacggcgttgggaccag
actgctgaccagactcctggtgccacacctaagaaattgtctagctgggatcaagctgag
acacctggacatactccgtcactgcgctgggatgaaacacctggccgtgcaaagggtagt
gagacacctggagcaacccctggatctaaaatatgggatccaactcctagtcatacacca
tcaggagctgcaacacctgggcgtggtgatacacctggtcatgcaacccccggacatgga
ggggcaacttccagtgctcggaagaatcgatgggatgagactcccaaaacagaaagagat
accccgggacatgggagtggatgggcagaaactcctcgtactgatcgagggggggattcc
attggtgaaacgccaactcctggagcaagtaaaagaaaatcacgttgggatgagacaccg
gcaagtcagatgggtggcagcacccctgtattaacaccaggcaaaacaccaattggtaca
ccagctatgaacatggcaacacctacaccagggcacataatgagcatgactcctgaacaa
cttcaagcctggcgatgggaaagagaaattgatgagagaaatagacccctttctgatgaa
gagttggatgctatgtttcctgagggctatcgggttctccctcccccggcaggttatgtt
cctattcgtactccagctcgtaaacttacagcaacaccaacccccttgggtggtatgact
ggattccacatgcaaacagaagacagaactatgaagagtgtcaatgaccagccctcagga
aatcttcctttcttaaagccagatgacatacaatattttgataaactgctggttgatgtt
gatgaatcaactcttagtccagaggaacagaaagaaagaaaaataatgaaactgcttttg
aagataaaaaatggcacccctccaatgaggaaggctgctttgcgacagattactgacaaa
gctcgagaatttggagctggcccactgttcaatcaaattttgccccttctgatgtctcca
acccttgaagatcaagaacgccacttgcttgttaaagttattgacaggatcttatataag
ttggatgatttagtccggccatatgtgcacaagattcttgtggtcattgaacctttgctg
attgatgaagattactatgctagagtggaaggcagagaaataatttccaacctggctaag
gcagctgggctggcaacaatgatctctactatgcgacctgatatcgataacatggatgaa
tatgttcgtaacacaacagctcgagcttttgctgttgttgcttctgccctaggaattcca
tccttgttgccatttttaaaagctgtgtgcaaaagcaagaagtcttggcaagccagacac
actggcatcaagattgtgcagcagattgctattctaatgggttgtgcaattttaccccat
ctcaggagtttggttgaaattattgaacacggcttggtggatgagcaacagaaagtacgc
accattagtgctttagccattgctgctttagctgaagcagccaccccatacggcattgaa
tcatttgactctgttctaaagcccctctggaaaggcatacgtcaacacagaggaaagggt
ctggctgctttcttgaaagccataggttatcttattccactcatggatgcagagtatgcc
aactactataccagagaagtaatgctaattcttatcagagagtttcagtctcctgatgaa
gaaatgaagaagattgtattgaaggtggtaaagcagtgttgtggcacagatggtgttgaa
gcaaactacattaaaacagaaattttgcctccatttttcaagcatttctggcagcataga
atggcattggatagaagaaattatagacagttggttgatacaactgtggagcttgcaaac
aaagtgggagctgccgaaattatttccaggattgtggatgatctgaaagatgaagctgag
caatatagaaaaatggttatggaaactattgaaaagatcatggggaatctgggtgcagct
gacattgaccacaagttggaagaacaacttattgatggtattctatatgctttccaagaa
cagactacagaggactcagtgatgttgaatggctttggtacagtggtaaatgctcttggc
aagcgagtgaaaccatacttaccccagatctgtggtactgtgttgtggcgtttgaacaac
aaatcagccaaagtgagacagcaagctgccgacctgatatctcgtactgcagttgtcatg
aaaacctgtcaagaggaaaaattgatgggccacttgggtgtggtattgtatgagtatttg
ggtgaagaataccctgaagtactgggcagtattctaggagctcttaaagccattgtgaat
gtcataggtatgcacaaaatgactcctccaattaaagatctgctgccaagactcacacct
atcttgaagaacaggcatgaaaaagtacaagagaattgtattgatttggttggacgtatt
gcagacagaggggcagaatatgtttctgcaagggaatggatgaggatttgctttgaattg
cttgagttgttaaaagcacataagaaagctattcgaagagctactgtgaatacatttggt
tatattgcaaaagctattggaccacatgatgtgctggcaaccttgctaaataatttgaaa
gtacaagaacgacaaaacagagtgtgtacaacagtggcaattgctattgtggctgaaacc
tgttccccttttacagtactgcctgcacttatgaatgaatacagagttccagagttgaat
gttcagaatggtgtattaaaatctctttctttcctgtttgaatatattggagaaatggga
aaagactacatttacgctgttacccctttacttgaagatgctttaatggacagggatctg
gttcacaggcaaacagctagtgcagttgtgcagcatatgtctcttggagtatatgggttt
ggctgtgaggactctctgaatcacttgctaaattatgtgtggcccaacgtgtttgaaaca
tcacctcatgtcatccaagccgttatgggagcactggagggcctaagggtggctattgga
ccttgccggatgttgcagtattgtttacagggtttgtttcaccctgccagaaaagtcaga
gatgtatactggaagatttataattccatctatattggttcacaggatgctctaatagca
cattatccacgaatctacaacgatgaaaagaatacctacattcgttatgaacttgattat
gtcttgtaa
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integrated database retrieval system
