Crotalus tigris (Tiger rattlesnake): 120310303
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Entry
120310303 CDS
T08476
Symbol
TNR
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120310303 (TNR)
04518 Integrin signaling
120310303 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120310303 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120310303 (TNR)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120310303 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_3rd
FN3_Tor_3rd
Fn3_VIN3
Fn3_Dep-1_2nd
EGF_2
Interfer-bind
CBM_4_9
DUF7949
TSC22
Bim_N
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
120310303
NCBI-ProteinID:
XP_039204519
LinkDB
All DBs
Position
Unknown
AA seq
1355 aa
AA seq
DB search
MRADGKNVILRNVVVSLNVMLLAIFRPFECRLEVMTERVKKQVTDEEGSFANYTSPVKEQ
PMVFSHIYNINVPLDSLCSSSLEASSDPEVSSEDDRMTEYTEQTSDSESQVTFTHKINLP
KQTCKCAASSRDIQELLSRIEMLEREVSILRDQCNSNCCQENAATGQLDYLPHCSSHGNF
SLETCGCICDEGWAGKNCSEPLCPLGCSSRGVCIDGQCVCDSDYSGEDCSEAHCPTDCSS
RGLCVDGECICEEGFAGEDCNELRCPEDCLGKGICANGTCICQEGYVGEDCGQLRCLNAC
SGRGFCQEGLCSCEEGYQGRDCSAVAPPESLQVAAVRDRSIDLEWDGPMAVTEYVISYQP
AVPGGLQLQQRVPGDWTTVTLKELEPGLTYNISIYAVISEVLSAPLGVKVATQLSTPRGL
QFKTITETTVEMEWEPFSFPFDGWEISFIPKDNEGGVIAQLPSSVTTFNQTGLKPGEEYT
VNVVALKEQARSSPTSASVSTLIDGPTQILVRDVSDTVAFVEWSPPRAKVDYILLKYGLE
NEEGGKTTFRLQPPLRQYSMQALRPGSPYEVSISAIRGANESDAAITHFVTEIDAPKNLR
VLSRTSDSLGLEWDNSEAEVENFKLVYSTLAGEQYHEVLVPRNAGAISKATLTDLVPGTE
YGIGISATMNSKQSVPATMNARTELDSPHDLIVTASTETSISVSWTKVKGPIDHYRVIFM
QASGMASEVTVSKDKSELTLTDLEPGTEYTISVIAERGRQQSLESTVDAFTGFRPITQLH
FSRVTSSSVNITWNDPSPPADRLILTYSPKDKKETKEVMLDPTKRHAALSGLQPSTEYIM
SLVAVHGLVSSEPIVGSVTTEIDPPKNLTIVNVTTESVTVHWAPPIAPFDHYKISCKSAQ
GRIDSIVVAKDITEYTLNYLQPSTEYEISLKSIKGREESESLLYTMYTAMDHPKNLIAIN
ITPTETLLKWDPPGVEAENYVIVLTHDSVAGETILVDRTEQEYKLINLLPSTSYKVTMYA
INGPVTSRTIYANFTTLLDPPSNLTASEVTRRSALLSWFPPVAEIENYIMTYRSPDGSRK
ELIVDAEDTWIRLEGLSENTEYTVRLQAAQDAMRSGFISTIFTTGGRVFMNPQDCAQHLI
NGDNLSGIYTISLNGDLSQRVQVYCDMTTDGGGWIVFQRRQNGLTDFFRKWADYRIGFGN
LEDEFWLGLDNMHKITSQGRYELWIDMRDGQETAYAYYDKFSIGDARSLYKLRIGEYNGT
AGDSLSYHQGRPFSTKDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINW
YHWKGHEFSIPFVEMKMRPYNHRNSLGRKRRSVQL
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgagggcagatggcaaaaatgtgatcctaagaaatgtggtggttagcctcaatgtaatg
ctgttggccatcttcagaccctttgaatgccgcctggaagtgatgacagagagagttaaa
aaacaggtgactgatgaagaaggcagctttgctaactacacatcccctgtcaaagagcaa
cccatggtcttcagccacatatacaacattaatgtgcctctggacagcctctgctcctca
tccctagaggcttcatctgacccagaggtgagttcggaagatgaccggatgacggaatac
accgagcagacctcagacagtgagagccaggtcaccttcacccacaagataaacctcccc
aaacagacttgcaagtgtgccgcctcctcccgggacatacaggagctgctgagcaggatt
gagatgctggaaagggaggtgtctatactccgagaccaatgcaactccaattgctgtcaa
gaaaatgcagccacagggcagctggattacctcccccattgcagcagtcatggtaacttt
agcctggaaacctgtgggtgcatctgcgatgaaggctgggctgggaagaattgctctgag
cctctctgtcccctcggctgctctagccggggtgtgtgcattgatggccagtgtgtttgc
gacagcgattatagtggggaggattgctctgaggcacattgcccaactgactgcagctcc
cgaggactctgtgtggacggagaatgtatctgtgaagaaggctttgctggagaagactgt
aatgagcttagatgcccagaggactgcttggggaaagggatctgtgccaatgggacttgc
atctgccaagaaggctacgtaggggaagactgtgggcagctgaggtgcctcaacgcttgc
agtgggcgtggattctgccaagaaggcctgtgctcttgcgaggaaggttaccaaggacgg
gattgttcagcagttgctcctccagagagtctgcaagtggctgcagtcagagaccgatca
attgacctggaatgggatggcccaatggctgtgactgaatatgtcatttcctaccagcca
gcagtgccagggggcctgcagctccagcagcgagtgccgggcgactggaccactgtcact
ctgaaggagttggagccaggactgacatacaacatcagcatctatgctgttatcagtgaa
gtgctcagtgcccctcttggagtcaaggtagccacccaactctctactccacgaggactg
cagttcaaaactatcacagagaccactgttgagatggaatgggaacccttctcttttccc
tttgatggctgggagatcagcttcatccccaaggacaatgaagggggtgtgattgctcaa
cttcccagtagtgtgacaactttcaatcagaccggcctgaaaccaggtgaagagtacaca
gtcaatgttgtagctctcaaggaacaagcccgaagttcacccacttcagccagcgtttca
accttaattgatgggccaactcagattttggttcgtgatgtttctgacactgtggccttc
gttgaatggtctccaccccgggctaaagtagactatattctactgaaatatggcctagag
aatgaggaaggaggaaagaccactttccggttgcagcctccactgaggcagtattccatg
caagctttacgacctggttccccatacgaagtttctatctcagctatccgtggtgcaaat
gagagcgatgctgcaatcactcactttgtaacagaaattgatgctccgaagaatttacgc
gtactctctcggacatcagacagcctaggccttgagtgggacaacagtgaggcagaagtg
gaaaacttcaaattggtatatagcaccctggctggtgagcagtatcacgaagttttggtg
ccacgcaatgcaggtgccatatccaaagccacccttactgatttggtgccaggaacagaa
tatggaattggaatttcagctacaatgaatagtaagcagagtgttccggccaccatgaat
gcaagaactgaactggacagccctcatgacctgattgtgacagcttccacagaaacatcc
atctctgtgtcctggaccaaagtcaagggtcccattgatcattatcgggtcatcttcatg
caagcttcaggaatggcatcagaggttactgtctctaaagataagtctgagctcacactc
acagacttagaacctgggactgaatacactatctcagtcattgctgaaagaggccgacag
caaagcttggaaagcactgtggatgccttcacaggattccgaccaatcacacaacttcac
ttttctcgtgtaacttcctccagtgtgaacatcacttggaatgacccctcacctccagca
gataggctgatactgacctacagccccaaagataagaaggaaaccaaggaagtgatgctg
gaccctacaaagagacatgctgctttgtcaggtctacaaccatccacagaatatatcatg
tccctggtggctgtacatggccttgtcagctctgagccaatagttggttcagtcacaaca
gagattgatccaccgaagaacttgacaattgtcaatgtgactacagaatctgtgactgtc
cattgggcacctccaattgcaccttttgaccactataagatttcctgcaaatccgcccaa
gggcgaattgacagtatagttgttgcaaaagacattactgaatatactctcaactacttg
cagccttcaactgaatatgaaatcagcctaaagagtataaagggcagagaggaaagtgaa
tcacttttatataccatgtatacagccatggatcatccaaagaatttgattgccataaac
attaccccaacagaaaccttgctaaagtgggacccgcctggcgttgaagctgaaaattat
gtcattgtgcttacccatgacagtgttgccggagaaactattttggtggacaggaccgaa
caagaatataagcttatcaatttgcttcccagtaccagctataaggtcacaatgtatgct
atcaatgggcctgtcacaagcagaaccatctacgccaactttactactcttttggatccg
ccctcaaatctgacggcaagtgaagtgactcggcgaagtgctcttctttcatggtttcct
cctgtagctgagattgagaactacatcatgacatacagatctcctgatgggagccgcaag
gagctgattgtggatgcagaagatacttggatccgcctagaaggtctttctgaaaacaca
gagtacactgtgcgcctgcaagcagctcaagatgctatgaggagtggatttatctccacc
atcttcactacaggaggccgtgtgtttatgaatcctcaggactgtgcccagcatttgatc
aatggcgacaatttgagtggcatttacaccatttcccttaatggggatctcagccagaga
gtacaagtatactgtgatatgactacagatggtggtggatggattgtcttccagagaaga
cagaatggactgactgatttctttcgcaaatgggcagactatcgcattggctttggaaac
ctggaagatgagttctggctggggctagataatatgcacaagatcacatcacaagggcgc
tatgaactgtggatagatatgagagatggtcaagaaacagcttatgcctattatgacaag
ttttccattggagatgccaggagtctctacaagctccggataggggaatataatggcact
gctggggattcactcagctatcatcagggacgtccattttccaccaaagacagagacaat
gatgttgccgttacaaactgtgctatgtcatacaaaggggcctggtggtataaaaactgc
catcgaactaacctcaatggcaaatatggcgaatcccgacacagccagggtattaactgg
tatcattggaaaggacatgagttctccataccttttgtggaaatgaaaatgcggccgtat
aaccaccgcaactccctggggaggaaacgccgatcagtgcaactgtga
DBGET
integrated database retrieval system
