Crotalus tigris (Tiger rattlesnake): 120310373
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Entry
120310373 CDS
T08476
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120310373 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120310373 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120310373 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120310373 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120310373 (COL4A5)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120310373 (COL4A5)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120310373 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120310373
NCBI-ProteinID:
XP_039204658
LinkDB
All DBs
Position
Unknown
AA seq
1693 aa
AA seq
DB search
MKLRPGARRLLLLLALGLGAWDAQAAVCHGCSKSTTCDCSGHKGEKGDRGFPGLEGQPGL
PGFPGPEGPAGSRGEKGDGGLPGATGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQGI
PGCNGTKGERGFPGSSGFPGLPGPPGPPGLIGMKGEPGEIITSPLPGQKGDPGFPGPPGI
PGSVGPPGVEGPVGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGYKGEKGEQGLQGPPGPP
GQIGEQTGNNDIVFQKGDQGVPGDPGPPGPPGPAGLPGPSGGGKGEKGEQGEPGKRGKPG
KDGEPGVPGSPGFPGDPGTHGIPGRDGEKGQKGETGLTGPPGQVIPRPDTGTTVGPKGSK
GFAGYPGSKGDRGYPGSPGPPGLPGTPGVARVGPPGPPGLSGERGQKGDQGLPGIAIPGQ
PGIDGQPGRPGPPGPRGPPGSTIPPAGLICERGLPGPQGTRGDQGFPGERGQKGDKGDTC
FNCIGSGIPGPPGQKGFPGLPGDPGSPGLPGPKGDKGVSGVIGLIGPQGPPGPPGPLGRP
GAKGDPGDLIGFPGLKGEKGNSGFPGPPGLPGLDGSPGKDGIRGHPGPKGEPGSIAFKGD
RGPTGDPGLPGLSGERGPPGPPGFGPQGPPGDKGLQGVPGRPGSPGAPGPKGEPAQSIPE
KGPPGPPGPPGRNGEDGFPGDPGQSGSPGLPGIPGQKGEPGFPGIGLPGPPGPKGFPGVS
GEPGLAGNPGRPGADGTPGLPGAKGQKGERGFGIPGPPGPPGPPGFKGAQGAKGVPGFSG
NPGSPGRPGFDGAVGAKGDTGPRGQPGLAGPPGIPGAGVQGPPGPPGLPGPAGPPGQSGL
QGIPGMKGDPGPPGFDVPGPPGDRGNPGFPGSPGLPGGPGAPGSPGRDGTPGIPGSKGEM
GVMGAPGPQGTPGSPGRNGLPGSKGNDGLSGQPGQRGLAGQKGTKGEPGLPGVPGKFDIN
LLGSKGEKGEPGEKGNLGLTGQKGYVGLPGDPGPAGSVGQPGAAGLPGPKGDTGIPGPPG
PSGPPGLKGANGEMGLPGPTGSKGSQGIPGRPGQAGSPGSPGPKGDKGDPGISGIGIPGP
PGPKGESGLPGYSGPPGTKGSFGNPGLPGSTGRPGAKGEPGLPGSPGKPGVAGPKGFDGS
PGSPGDPGPPGLPGEFGRPGSPGLLGEKGQPGQDGIPGPAGQKGEPGQPGFGLPGPPGLQ
GLTGQKGDSGFSGPPGPPGPPGLKGEMGAKGYPGNQGLEGPPGLPGRASEGPKGNPGPPG
IPGRPGATGPPGLPGPEGPRGPPGIGGVKGEKGNPGQPGQPGLPGLKGDQGAPGQSGEPG
RPGLNGMKGDPGVPGVPGFPGMKGPTGPMGLTGPEGDPGPFGSPGPPGIPGPAGKTIVIK
GDQGPPGLPGQPGIKGLPGLPGPPGLPGSIGLPGDVGRDGLPGFDGPAGRKGEKGLPGQP
GLRGSHGPPGPDGLQGPPGQPGAGSVAHGFLITRHSQTTDSPFCPPGTSRIYDGFSLLYV
QGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPL
TGKNIQPFISRCTVCEAPAMVIAVHSQTIQIPSCPQGWNSLWIGYSFMMHTSAGAEGSGQ
ALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEISEMFNKPQSETLKAGDLR
ARISRCQVCMKRT
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgcccgggcgcccggcgcctcctcttgctgctcgccctgggactcggcgct
tgggacgcccaggctgcggtgtgccatgggtgttccaaaagcactacgtgtgactgtagt
ggacataaaggagaaaagggtgatcgaggtttcccaggtttagaaggccagcccggtttg
cctggattccctggcccagaaggaccagccggatcccgtggcgagaagggtgatggtgga
cttccaggggctacaggacccaaaggcattcgaggtcctccagggttaccaggttttccg
ggaacaccagggcttcccggactgcccggtcaggatggacctccagggctccaaggtatc
ccaggatgcaatggaacgaagggagaacgtggttttccaggcagctcgggtttcccaggt
ttgcctggacctcccggtccccccggtttgataggaatgaaaggtgaaccaggagagatt
atcacctctcctctgcctggacagaaaggtgatccaggatttcccggtccacctggaatt
ccaggctctgtcggtccccctggtgtagaaggtccagttggtcctcccggacccccaggt
ttgacgggtcctcctggtcccccaggactgccaggtcctaagggcaatatgggcttgaat
ttccaaggatacaaaggagaaaaaggtgaacagggacttcaaggacctccagggccacca
ggacagatcggcgaacagacaggaaataatgatatagtatttcaaaaaggagatcagggt
gttccaggtgacccaggccccccagggcctccggggcccgctgggcttcctggcccttct
gggggtggaaaaggtgaaaaaggtgagcaaggagaaccaggcaaaagagggaagccagga
aaagacggggaacccggagtgccaggttcacctggttttcctggtgatcccggcacgcat
ggcattccgggaagagatggagagaaaggtcaaaaaggagaaactggtttaactggccca
cctggacaggtgattccaaggccggatactggtacaacagtgggaccaaaaggtagcaaa
ggttttgcgggctatcccggaagcaaaggagatcgtggttatcctggctccccaggccct
cctggtttaccaggtaccccaggagttgcaagggtaggtcctcctggtccacctggatta
tctggtgaaaggggacagaaaggagatcagggccttcctgggatcgccataccaggacag
ccaggaattgatggtcaaccagggcgcccaggaccaccagggccccgaggaccaccaggg
tcaaccattccacccgctggtcttatttgcgaacgaggacttcctggcccgcaaggaacc
cgaggtgatcaaggatttccgggggaaagaggccagaaaggtgacaagggagacacctgc
tttaattgcatcggaagtggcatcccgggccctccagggcaaaaaggttttccgggtctt
cctggagatccaggttctcctggtcttcctgggccaaaaggtgacaaaggcgtttctggt
gtaattggacttattgggcctcaaggtcctccagggcccccaggccctcttggacgtcct
ggtgctaaaggtgatccaggtgacctgattggtttccctggactgaaaggtgaaaagggg
aattcaggtttcccaggacctccagggctgcccggcttagatggttctccggggaaagat
ggaatccgaggtcatcctggacccaagggcgagccaggtagcattgctttcaaaggagac
cggggccctactggggatccaggtcttcctggactcagtggagagcgagggcctccagga
cctcctggatttggaccacaaggacctccaggagacaaggggcttcaaggcgttcctgga
cggccaggttccccaggagctccagggcccaaaggcgaacctgctcaatctattcctgaa
aaaggacccccgggacctccgggccccccaggcagaaatggtgaagatggttttccagga
gaccctggtcaatctggatcacctgggttgccaggaatccccggccaaaaaggtgaacct
ggcttccctggcattggactcccaggcccaccagggcccaaaggttttcccggtgtatca
ggtgaacctggacttgcaggaaaccctggaagacccggagctgatggaacccctggactg
cctggagcgaaaggacagaagggagagcgaggatttggcattccaggacccccagggcca
cctggtccaccaggtttcaaaggagcacaaggtgccaaaggagtgcccggcttctcagga
aaccctgggtccccaggacggccaggttttgatggagctgtcggcgctaaaggtgataca
ggaccacgtggccagcctgggctagctggacctccagggattccaggagctggtgtgcaa
ggaccacctgggccacccggtcttccaggaccagcaggaccaccaggccaatcaggactt
caaggcatccctggtatgaaaggtgatcctgggccaccaggatttgatgttcccggtcct
ccaggtgacaggggcaacccaggttttcctggatcacctggtcttccaggtggaccaggt
gcccctggttctccaggacgagatggaactccaggcataccaggaagcaaaggcgagatg
ggagtgatgggggcacctggtcctcagggaacacctggatctcctggcagaaatggctta
cctggctccaaaggcaatgatggtttatcaggacaaccaggacaacgaggacttgccgga
caaaaaggcaccaaaggagaacctggtttgccaggagtaccaggaaaatttgatattaac
ctattgggttccaaaggagaaaagggggaacctggagagaaaggtaaccttggtctgacc
ggtcagaagggttatgtaggcctcccaggtgacccagggcccgctggatcagttggacag
ccaggtgcagctggattgccaggtcccaaaggagacactgggattccaggtccccctgga
ccatctgggcctccaggacttaaaggtgccaacggcgagatgggcctgccaggtcccact
ggctcaaaaggttcacaaggtatcccagggcgtcctggtcaggctggttctcctggatca
cctggaccgaagggagacaagggtgatcccggtatttcaggcatcggtattccaggtcct
cctggccccaagggtgaaagcggactgcctggttactctggtcctccaggcactaaaggg
tcctttggaaatccggggttgcctggctcgacaggcaggccaggagcaaaaggtgaacct
ggccttcctggatccccagggaaaccaggcgttgcaggaccaaaaggttttgatggatct
ccaggaagcccaggtgatccagggccacctggacttccaggtgaatttggtcgccctggc
tctccaggccttctgggggaaaaaggacaacctggacaagatggcatccctggaccagca
gggcagaaaggtgaaccaggtcaaccaggatttggacttcccggacctccaggcctccaa
ggactcacaggtcaaaagggagattcgggcttctctggacccccagggcctccgggaccc
cctggtttaaaaggagaaatgggcgccaaggggtatcctggcaaccagggcttagaaggt
cccccaggacttcctgggcgagcatcagaaggacccaagggtaaccctggacctccaggc
ataccaggacggccaggtgccacaggtcctccaggtcttcctgggcccgagggacctcgt
ggaccacccgggattgggggagtgaaaggagaaaaaggaaaccctggccagcccggtcag
cctggactgcccggactgaagggtgatcagggggcacctggacagtcgggtgaacctgga
cgtccaggtctgaacgggatgaagggagatccaggtgttccaggagtaccaggatttcca
ggtatgaagggacctactggacctatgggacttactggccctgaaggagaccctggaccc
tttggctctccaggtcctccaggaatacctggcccggctggaaaaacaattgtgattaaa
ggtgatcaaggaccacctggtcttccagggcagcctggaataaaaggtctacctggactt
ccagggcctccaggtttgccaggttcaattggtcttcctggtgacgttggacgtgatggc
cttcctggttttgatggtccagcggggcgtaaaggggagaaaggactcccaggccagcca
ggtctacgtggttcacacggaccccctggccctgatggattgcaaggtcctccaggacag
ccaggagcaggttcagttgcccatggattcctcataactcgccacagtcaaaccaccgac
agccccttctgcccaccgggaaccagccggatctatgatggattttcccttctctacgtg
caaggaaacgagagagctcatggacaggatctgggcactgctggcagctgtctccgccgt
ttcagcaccatgcccttcatgttttgcaacatcaacaacgtctgtaactttgcatccagg
aatgactactcttactggctttctactcctgagccgatgccaatgagcatggagccacta
actggaaagaatatccaaccttttattagccgttgcacagtctgtgaagctcctgcgatg
gtcatagcagtccacagccagaccattcaaatcccctcgtgtccacagggctggaactcg
ctatggatcggatattcattcatgatgcacaccagtgcgggagcagaaggatccggacag
gccttggcttctcctggctcctgtcttgaggaattccgctcagctcccttcattgagtgc
catggccgagggacctgcaactattacgccaattcatacagtttttggctggccactgtg
gaaatatcagaaatgttcaataaacctcagtcggagactcttaaggctggtgacctccgg
gcccgtatcagtcgatgccaagtttgcatgaagaggacgtaa
DBGET
integrated database retrieval system
