Crotalus tigris (Tiger rattlesnake): 120310375
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Entry
120310375 CDS
T08476
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04382
Cornified envelope formation
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04518
Integrin signaling
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120310375 (COL4A6)
04518 Integrin signaling
120310375 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120310375 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120310375 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120310375 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120310375 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120310375 (COL4A6)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120310375 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120310375 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120310375
NCBI-ProteinID:
XP_039204662
LinkDB
All DBs
Position
Unknown
AA seq
1709 aa
AA seq
DB search
MFAGAPVLVIALCLAAHPVRGGGKKFYHGICGGRDCTAGCKCFPEKGARGQPGLIGNQGP
MGIEGFTGPEGVRGLKGEKGITGPTGAAGMKGDKGPMGVPGFPGIYGVPGHPGQPGSRGL
PGLDGCNGTIGSPGTSGSDGLPGLQGPPGRPGPKGPKGEPFYAPGIFKGVKGESGLPGLD
GAIGPKGFPGRPGPAGPIGLPGFPGPPGFPGPPGPVGSSNLVFQGEKGEKGDVGLPGLAG
PPSSTGTEEYVGVSKGQRGAKGVPGPKGIPGLPGAPGRPGFWSFGEKGEKGIPGLPGPRG
DMGQRGPEGSIGRKGVLGESGFPGWDGSPGGKGEFGDVGPPGLPIIVDTSGAIISGPPGE
PGTPGNPGSRGDKGTVGLPGFPGQPGGPPPLPGPPGSPGIPGISGVKGEPGEPGRTTVGS
PGLPGKDGAAGSPGAPGLPGASAYPAGAILRGEPGEPGIPGPRGPPGIFGLRGYKGDGGD
CACDGGITRIGLPGESGNPGQPGRQGDVGPKGSVGDPGDGILGPPGPPGFLGQPGLPGIK
GQKGEPSSASGRGPRGDPGNVGLRGPSGPPGTPGRDGVQGVPGQRGPPGDDGFGFPGDKG
FPGLPGSKGKRGEIGLPGIGFPGPNGSFGPRGDPGISGIPGQPGPPGPPGDCCCGEEVGN
GDLDAQGGEAVPCIIPGIIGPPGLPGLSGLPGSKGSKGFPGFPGQPGLNGLKGEPGTPGV
ARFPGMPGFPGPRGDPGPKGLPGIDGADGQQGPEGCPGLVGPNGDPGDVFGAEPGPQGEP
GVPGLPGDKGFPGDFGFPGTPGLDGKPGLPGRKGGFGEPGLPGFDGPPGPPGPGGPFGIK
GKPGPLGTIGLPGSQGCQGLPGTKGPRGEAGTPGPAGMKGLPGLNGRPGEPGERGLPGPP
GLWGPDGTPGFPGSKGEKGSLGVIGFPGMPGPPGLPGVDGLQGTSGEPGRSGSPGFSGFP
GPKGDRGVHGPPGPPIFVPPEVALRFKGNKGDPGMVGQRGYPGPRGGKGPPGVRGQPGLP
GRYGSPSREKGQPGEPGFPGTFGPPGLLGQKGSGGISGFPGMPGGRGAEGIPGSPAPPGI
IGLRGPKGDRGETRGIPGGVGPKGQRGDQGLPGITGVQGTKGDPGYPGDPGLNGQKGSPG
NPGQEGPRGFPGSVRGNPGFPGNPGQRGAPGFPGSPGSPGPAGPKGYPGFPGLTGLNGLP
GTKGSPGKQGLSETGLPGPAGIPGVKGQRGEPSFHFGASGLRGPKGPAGEIGLPGSPGAT
GVRGPPGISLPSDLPGKPGDAGHPGEDGRPGFQGPSGPPGPPGPAFNQGDRGDPGPTGPS
GFSGLKGNAGIPGFSGSPGEPGFKGFRGDPGFMGMPGKDGPVGDPGFPGPKGKVGRPGFP
GLQGSPGLTQTPEDIRAPPGLMGLPGNDGNPGLNGDPGFQGQTGSQGPKGKGGIPGQVGI
NGLPGSPGMVGDPGSPGTVGLPGFEGRPGNPGLAGLPGMPGRSVAVGYTLVKHSQSEQIP
PCPVGMNKLWEGYSLLYVKGQDKSHNQDLGFAGSCLPRFSTMPFIYCNIDEVCYYASRND
KSYWLSTTAPIPMMPVSSYQIAQYISRCSVCEAPSQAVAVHSQDITIPQCPEGWRSLWIG
YSFLMHTAAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFSNKYSFWLTTVEATNQ
FAESPISETLKAGQLQTRVGRCQVCMKNL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccggcgcgcccgtcttggtaattgccctgtgcctggcagcgcatcccgtccgc
gggggcgggaagaaattttatcatggaatttgtgggggtcgcgattgtacagctggctgc
aagtgctttccggagaaaggggcgcggggtcaaccaggactaatcgggaaccaaggacca
atgggcattgaaggctttactggaccagagggagtgagaggactgaaaggagagaagggt
ataacaggtcctacaggtgcagctggaatgaagggagacaagggcccaatgggtgttcct
ggattccctggaatttatggcgttccgggacatcccggtcagccaggatccagaggtctt
cctggtttagatggctgtaatggtaccattggaagtcctggtacctccgggtcagatgga
ttgcctggtctccaaggaccaccgggtcgtcctggtcctaaaggcccaaaaggtgaacct
ttttatgccccgggaatttttaaaggagtgaagggagaaagtggtcttcctggactggat
ggtgctattggaccgaaaggttttccaggtcgaccaggccctgctggccccatcgggcta
cctggatttccgggaccaccaggtttcccaggtcccccgggacctgtgggcagtagcaat
ctagttttccagggagaaaaaggagaaaaaggagatgtgggattgccaggactagcaggc
cctccatcttccacagggacagaagaatatgttggagtgtccaaaggacagcgaggagca
aagggagttcctggccccaaaggaattccaggtctaccaggagctcctggacgtccgggt
ttctggagctttggagaaaagggagaaaaaggcatccctggtttaccaggacccagggga
gacatgggacagaggggaccggaaggaagcataggcagaaagggagtcctgggcgaatca
ggatttcccggttgggacggatcaccaggcggaaagggtgaatttggagatgtgggtcca
ccaggccttccaataattgttgacacaagtggtgccatcatatcaggtccccctggagaa
cccggcacaccaggaaaccctggatctagaggagataaggggactgttggtttgccagga
tttcctgggcaaccaggaggacctccaccccttccaggtcccccaggttcaccaggaatc
ccagggatctcaggagttaaaggtgaaccaggagagcccggaaggaccacagttggatct
ccaggcctgcctgggaaagatggagctgcagggtcaccaggagctccagggttaccaggt
gcttcagcatacccagcaggtgcaatccttagaggagaacctggggaaccaggtattccg
gggccaagggggcccccaggaatctttggcctaagaggatataaaggggacggtggagat
tgtgcttgtgatggaggaatcacgagaataggcttgccaggagagtcaggtaaccctggt
caacctggaagacaaggtgatgttgggccaaaaggatccgtgggggatccaggagatggt
atactaggtccccctggaccacccggtttcttgggtcaacctggtcttccaggcattaaa
ggacaaaaaggggaaccatcttcagcctcaggcagaggacctcgaggagatccagggaat
gttggcctcaggggtccttcagggccacctggaactcctggtagggatggtgtgcaaggt
gtcccaggtcaacgtggtcctccgggtgatgatggatttggcttcccgggggacaaaggt
ttccctggtctacctggttcaaaggggaagcgtggtgaaattggcctacctggcattggt
tttccgggaccaaatggaagctttggacctagaggtgatcccgggatcagtggcattcca
ggacaacctggcccaccagggccgccaggtgattgctgctgcggtgaggaggttggtaat
ggagacttagacgctcagggaggagaagctgtgccgtgcataatccctggaatcattggt
ccacctggacttccgggactttcagggttgccaggttccaagggtagcaaaggattccct
ggttttccagggcagccaggtttaaatggcttaaaaggagaaccaggcacacctggagtg
gctcggttcccaggaatgccagggtttcctggccctcgtggagatccaggtccaaaagga
ctaccaggaattgatggagcggatgggcagcaaggtccagaaggctgtcctggtttggtt
ggtccaaatggagaccctggtgacgtgtttggggctgaaccaggaccccaaggagaacct
ggggtacctggcttaccaggagataaaggctttcctggagattttggctttcctggaaca
ccaggtctggatggaaagcctggcctgccaggtagaaaagggggatttggagaaccaggt
cttccaggctttgatggaccgccaggaccaccaggaccaggaggtccatttggcatcaaa
ggaaaaccaggtcccttgggaacaatcggccttccaggatcacaaggctgccaaggactt
ccgggaacaaaaggaccaagaggagaggctggtacaccaggtcccgccggcatgaaaggg
cttccaggtcttaatggacggccaggagagccaggggaacgaggattgccgggacctcca
ggtctctggggcccagacggaactccaggtttccccggatcaaaaggtgaaaagggctcg
ttgggtgtgattggttttcccgggatgccaggcccacctgggctccctggcgtggatggc
ctccaaggaacttctggtgaaccaggaagaagtggaagccctgggttttctggtttccct
ggccccaaaggggacagaggtgtccatggtcctcctggccctcccattttcgtaccccca
gaggtggccctcagattcaaagggaataaaggagatcctggaatggttggacagagaggg
tatccaggaccaagagggggaaaaggacctcctggggtccgtgggcagccaggacttcca
ggaagatacggatcaccatctagggagaaaggacagccaggagagccagggtttccagga
acgtttggtcctcctgggttattgggacaaaagggatctggtggcatctcgggctttcct
ggaatgcctgggggaagaggtgcagaaggtataccaggctcaccggcccccccaggaatt
atcggattgcgtggtccaaaaggtgaccgaggggaaacccgaggaatcccaggtggtgtg
ggacctaagggccaacgaggagaccaagggctgccaggcatcacaggtgtccaaggaaca
aaaggtgaccccggatacccaggagatcctggactaaatggacagaaaggttcaccaggg
aaccctggacaagaaggaccaagaggctttcctggatctgtaagaggcaacccaggtttt
ccagggaatcctgggcaacgtggagctccaggattccctggatctcctggatctcctggc
cctgccggaccaaaaggatacccaggatttccaggactgactggcctaaatggtttacct
ggcactaaaggttcacctggaaaacaaggcctgagtgaaaccggactccctggaccggcg
ggaattccaggggtcaaaggtcaacgaggtgaacccagtttccactttggagcttctggt
cttcgcggaccaaaaggacctgcaggagaaataggtcttcctgggagcccaggtgccact
ggtgtgcgaggcccccctggcatctctttgccttcagaccttcctggaaaacctggtgac
gctggacatcctggagaagatgggcgaccaggcttccaaggaccttctgggccaccagga
ccaccgggcccagccttcaatcaaggtgatcgaggtgatccaggccccaccggtccttct
ggcttctcaggcctcaaaggcaatgcaggcatccctggatttagtggatcccctggcgaa
ccaggtttcaaaggattcagaggggacccaggtttcatgggaatgcccgggaaagatgga
ccagtgggtgatccaggtttccctgggccaaaaggcaaagtaggccgtccaggttttcct
gggctgcaaggatctccaggcttaacccaaacaccagaagatatcagagctcctcctggc
ttaatgggattgcccggaaatgatgggaaccctggtttaaatggagaccctggcttccag
gggcaaactggatcacaaggtccaaaaggaaagggaggcatacctggccaggtgggcatc
aatggcttaccaggttctcctgggatggtaggagacccaggttctccaggaactgtgggg
ctaccaggatttgaaggacgtcctgggaatccaggtctggctgggctgcccgggatgcca
gggcgtagcgttgcagtgggctataccttggtgaaacatagccagtcagagcagattcct
ccctgtccagtgggcatgaacaaactctgggaaggttacagtttgctctatgtgaaaggc
caggacaagtcccacaatcaagatctgggttttgctggctcctgcctgcctcgcttcagc
acgatgccttttatttattgcaacatcgacgaagtgtgctactacgccagccgcaatgat
aaatcatattggctttccaccacggctccgatacccatgatgcccgtcagcagctaccaa
atcgcccagtacatcagtcgctgctcagtgtgcgaagcaccgtcccaagctgtggctgtc
cacagccaggacatcaccatcccacaatgccctgaaggctggcgcagtctctggattggg
tactccttcctcatgcacacggctgccgaaggcggtggccagtccctggtctcccctgga
tcctgcctggaggactttcgtgccactccgttcattgagtgcaacggtgcccgaggaacg
tgccactacttttccaacaagtacagtttttggctgaccacagtggaggcgaccaatcaa
tttgctgagtctcccatctccgaaacactgaaagcgggtcagctccagacacgggtggga
cggtgccaagtctgcatgaaaaatttgtag
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integrated database retrieval system
