Crotalus tigris (Tiger rattlesnake): 120310375
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Entry
120310375 CDS
T08476
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120310375 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120310375 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120310375 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120310375 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120310375 (COL4A6)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120310375 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120310375 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120310375
NCBI-ProteinID:
XP_039204662
LinkDB
All DBs
Position
Unknown
AA seq
1709 aa
AA seq
DB search
MFAGAPVLVIALCLAAHPVRGGGKKFYHGICGGRDCTAGCKCFPEKGARGQPGLIGNQGP
MGIEGFTGPEGVRGLKGEKGITGPTGAAGMKGDKGPMGVPGFPGIYGVPGHPGQPGSRGL
PGLDGCNGTIGSPGTSGSDGLPGLQGPPGRPGPKGPKGEPFYAPGIFKGVKGESGLPGLD
GAIGPKGFPGRPGPAGPIGLPGFPGPPGFPGPPGPVGSSNLVFQGEKGEKGDVGLPGLAG
PPSSTGTEEYVGVSKGQRGAKGVPGPKGIPGLPGAPGRPGFWSFGEKGEKGIPGLPGPRG
DMGQRGPEGSIGRKGVLGESGFPGWDGSPGGKGEFGDVGPPGLPIIVDTSGAIISGPPGE
PGTPGNPGSRGDKGTVGLPGFPGQPGGPPPLPGPPGSPGIPGISGVKGEPGEPGRTTVGS
PGLPGKDGAAGSPGAPGLPGASAYPAGAILRGEPGEPGIPGPRGPPGIFGLRGYKGDGGD
CACDGGITRIGLPGESGNPGQPGRQGDVGPKGSVGDPGDGILGPPGPPGFLGQPGLPGIK
GQKGEPSSASGRGPRGDPGNVGLRGPSGPPGTPGRDGVQGVPGQRGPPGDDGFGFPGDKG
FPGLPGSKGKRGEIGLPGIGFPGPNGSFGPRGDPGISGIPGQPGPPGPPGDCCCGEEVGN
GDLDAQGGEAVPCIIPGIIGPPGLPGLSGLPGSKGSKGFPGFPGQPGLNGLKGEPGTPGV
ARFPGMPGFPGPRGDPGPKGLPGIDGADGQQGPEGCPGLVGPNGDPGDVFGAEPGPQGEP
GVPGLPGDKGFPGDFGFPGTPGLDGKPGLPGRKGGFGEPGLPGFDGPPGPPGPGGPFGIK
GKPGPLGTIGLPGSQGCQGLPGTKGPRGEAGTPGPAGMKGLPGLNGRPGEPGERGLPGPP
GLWGPDGTPGFPGSKGEKGSLGVIGFPGMPGPPGLPGVDGLQGTSGEPGRSGSPGFSGFP
GPKGDRGVHGPPGPPIFVPPEVALRFKGNKGDPGMVGQRGYPGPRGGKGPPGVRGQPGLP
GRYGSPSREKGQPGEPGFPGTFGPPGLLGQKGSGGISGFPGMPGGRGAEGIPGSPAPPGI
IGLRGPKGDRGETRGIPGGVGPKGQRGDQGLPGITGVQGTKGDPGYPGDPGLNGQKGSPG
NPGQEGPRGFPGSVRGNPGFPGNPGQRGAPGFPGSPGSPGPAGPKGYPGFPGLTGLNGLP
GTKGSPGKQGLSETGLPGPAGIPGVKGQRGEPSFHFGASGLRGPKGPAGEIGLPGSPGAT
GVRGPPGISLPSDLPGKPGDAGHPGEDGRPGFQGPSGPPGPPGPAFNQGDRGDPGPTGPS
GFSGLKGNAGIPGFSGSPGEPGFKGFRGDPGFMGMPGKDGPVGDPGFPGPKGKVGRPGFP
GLQGSPGLTQTPEDIRAPPGLMGLPGNDGNPGLNGDPGFQGQTGSQGPKGKGGIPGQVGI
NGLPGSPGMVGDPGSPGTVGLPGFEGRPGNPGLAGLPGMPGRSVAVGYTLVKHSQSEQIP
PCPVGMNKLWEGYSLLYVKGQDKSHNQDLGFAGSCLPRFSTMPFIYCNIDEVCYYASRND
KSYWLSTTAPIPMMPVSSYQIAQYISRCSVCEAPSQAVAVHSQDITIPQCPEGWRSLWIG
YSFLMHTAAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFSNKYSFWLTTVEATNQ
FAESPISETLKAGQLQTRVGRCQVCMKNL
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccggcgcgcccgtcttggtaattgccctgtgcctggcagcgcatcccgtccgc
gggggcgggaagaaattttatcatggaatttgtgggggtcgcgattgtacagctggctgc
aagtgctttccggagaaaggggcgcggggtcaaccaggactaatcgggaaccaaggacca
atgggcattgaaggctttactggaccagagggagtgagaggactgaaaggagagaagggt
ataacaggtcctacaggtgcagctggaatgaagggagacaagggcccaatgggtgttcct
ggattccctggaatttatggcgttccgggacatcccggtcagccaggatccagaggtctt
cctggtttagatggctgtaatggtaccattggaagtcctggtacctccgggtcagatgga
ttgcctggtctccaaggaccaccgggtcgtcctggtcctaaaggcccaaaaggtgaacct
ttttatgccccgggaatttttaaaggagtgaagggagaaagtggtcttcctggactggat
ggtgctattggaccgaaaggttttccaggtcgaccaggccctgctggccccatcgggcta
cctggatttccgggaccaccaggtttcccaggtcccccgggacctgtgggcagtagcaat
ctagttttccagggagaaaaaggagaaaaaggagatgtgggattgccaggactagcaggc
cctccatcttccacagggacagaagaatatgttggagtgtccaaaggacagcgaggagca
aagggagttcctggccccaaaggaattccaggtctaccaggagctcctggacgtccgggt
ttctggagctttggagaaaagggagaaaaaggcatccctggtttaccaggacccagggga
gacatgggacagaggggaccggaaggaagcataggcagaaagggagtcctgggcgaatca
ggatttcccggttgggacggatcaccaggcggaaagggtgaatttggagatgtgggtcca
ccaggccttccaataattgttgacacaagtggtgccatcatatcaggtccccctggagaa
cccggcacaccaggaaaccctggatctagaggagataaggggactgttggtttgccagga
tttcctgggcaaccaggaggacctccaccccttccaggtcccccaggttcaccaggaatc
ccagggatctcaggagttaaaggtgaaccaggagagcccggaaggaccacagttggatct
ccaggcctgcctgggaaagatggagctgcagggtcaccaggagctccagggttaccaggt
gcttcagcatacccagcaggtgcaatccttagaggagaacctggggaaccaggtattccg
gggccaagggggcccccaggaatctttggcctaagaggatataaaggggacggtggagat
tgtgcttgtgatggaggaatcacgagaataggcttgccaggagagtcaggtaaccctggt
caacctggaagacaaggtgatgttgggccaaaaggatccgtgggggatccaggagatggt
atactaggtccccctggaccacccggtttcttgggtcaacctggtcttccaggcattaaa
ggacaaaaaggggaaccatcttcagcctcaggcagaggacctcgaggagatccagggaat
gttggcctcaggggtccttcagggccacctggaactcctggtagggatggtgtgcaaggt
gtcccaggtcaacgtggtcctccgggtgatgatggatttggcttcccgggggacaaaggt
ttccctggtctacctggttcaaaggggaagcgtggtgaaattggcctacctggcattggt
tttccgggaccaaatggaagctttggacctagaggtgatcccgggatcagtggcattcca
ggacaacctggcccaccagggccgccaggtgattgctgctgcggtgaggaggttggtaat
ggagacttagacgctcagggaggagaagctgtgccgtgcataatccctggaatcattggt
ccacctggacttccgggactttcagggttgccaggttccaagggtagcaaaggattccct
ggttttccagggcagccaggtttaaatggcttaaaaggagaaccaggcacacctggagtg
gctcggttcccaggaatgccagggtttcctggccctcgtggagatccaggtccaaaagga
ctaccaggaattgatggagcggatgggcagcaaggtccagaaggctgtcctggtttggtt
ggtccaaatggagaccctggtgacgtgtttggggctgaaccaggaccccaaggagaacct
ggggtacctggcttaccaggagataaaggctttcctggagattttggctttcctggaaca
ccaggtctggatggaaagcctggcctgccaggtagaaaagggggatttggagaaccaggt
cttccaggctttgatggaccgccaggaccaccaggaccaggaggtccatttggcatcaaa
ggaaaaccaggtcccttgggaacaatcggccttccaggatcacaaggctgccaaggactt
ccgggaacaaaaggaccaagaggagaggctggtacaccaggtcccgccggcatgaaaggg
cttccaggtcttaatggacggccaggagagccaggggaacgaggattgccgggacctcca
ggtctctggggcccagacggaactccaggtttccccggatcaaaaggtgaaaagggctcg
ttgggtgtgattggttttcccgggatgccaggcccacctgggctccctggcgtggatggc
ctccaaggaacttctggtgaaccaggaagaagtggaagccctgggttttctggtttccct
ggccccaaaggggacagaggtgtccatggtcctcctggccctcccattttcgtaccccca
gaggtggccctcagattcaaagggaataaaggagatcctggaatggttggacagagaggg
tatccaggaccaagagggggaaaaggacctcctggggtccgtgggcagccaggacttcca
ggaagatacggatcaccatctagggagaaaggacagccaggagagccagggtttccagga
acgtttggtcctcctgggttattgggacaaaagggatctggtggcatctcgggctttcct
ggaatgcctgggggaagaggtgcagaaggtataccaggctcaccggcccccccaggaatt
atcggattgcgtggtccaaaaggtgaccgaggggaaacccgaggaatcccaggtggtgtg
ggacctaagggccaacgaggagaccaagggctgccaggcatcacaggtgtccaaggaaca
aaaggtgaccccggatacccaggagatcctggactaaatggacagaaaggttcaccaggg
aaccctggacaagaaggaccaagaggctttcctggatctgtaagaggcaacccaggtttt
ccagggaatcctgggcaacgtggagctccaggattccctggatctcctggatctcctggc
cctgccggaccaaaaggatacccaggatttccaggactgactggcctaaatggtttacct
ggcactaaaggttcacctggaaaacaaggcctgagtgaaaccggactccctggaccggcg
ggaattccaggggtcaaaggtcaacgaggtgaacccagtttccactttggagcttctggt
cttcgcggaccaaaaggacctgcaggagaaataggtcttcctgggagcccaggtgccact
ggtgtgcgaggcccccctggcatctctttgccttcagaccttcctggaaaacctggtgac
gctggacatcctggagaagatgggcgaccaggcttccaaggaccttctgggccaccagga
ccaccgggcccagccttcaatcaaggtgatcgaggtgatccaggccccaccggtccttct
ggcttctcaggcctcaaaggcaatgcaggcatccctggatttagtggatcccctggcgaa
ccaggtttcaaaggattcagaggggacccaggtttcatgggaatgcccgggaaagatgga
ccagtgggtgatccaggtttccctgggccaaaaggcaaagtaggccgtccaggttttcct
gggctgcaaggatctccaggcttaacccaaacaccagaagatatcagagctcctcctggc
ttaatgggattgcccggaaatgatgggaaccctggtttaaatggagaccctggcttccag
gggcaaactggatcacaaggtccaaaaggaaagggaggcatacctggccaggtgggcatc
aatggcttaccaggttctcctgggatggtaggagacccaggttctccaggaactgtgggg
ctaccaggatttgaaggacgtcctgggaatccaggtctggctgggctgcccgggatgcca
gggcgtagcgttgcagtgggctataccttggtgaaacatagccagtcagagcagattcct
ccctgtccagtgggcatgaacaaactctgggaaggttacagtttgctctatgtgaaaggc
caggacaagtcccacaatcaagatctgggttttgctggctcctgcctgcctcgcttcagc
acgatgccttttatttattgcaacatcgacgaagtgtgctactacgccagccgcaatgat
aaatcatattggctttccaccacggctccgatacccatgatgcccgtcagcagctaccaa
atcgcccagtacatcagtcgctgctcagtgtgcgaagcaccgtcccaagctgtggctgtc
cacagccaggacatcaccatcccacaatgccctgaaggctggcgcagtctctggattggg
tactccttcctcatgcacacggctgccgaaggcggtggccagtccctggtctcccctgga
tcctgcctggaggactttcgtgccactccgttcattgagtgcaacggtgcccgaggaacg
tgccactacttttccaacaagtacagtttttggctgaccacagtggaggcgaccaatcaa
tttgctgagtctcccatctccgaaacactgaaagcgggtcagctccagacacgggtggga
cggtgccaagtctgcatgaaaaatttgtag
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integrated database retrieval system
