Crotalus tigris (Tiger rattlesnake): 120311392
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Entry
120311392 CDS
T08476
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04512
ECM-receptor interaction
ctig04514
Cell adhesion molecules
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120311392 (SDC1)
04514 Cell adhesion molecules
120311392 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120311392 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ctig04131
]
120311392 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ctig04090
]
120311392 (SDC1)
00535 Proteoglycans [BR:
ctig00535
]
120311392 (SDC1)
Membrane trafficking [BR:
ctig04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
120311392 (SDC1)
CD molecules [BR:
ctig04090
]
Proteins
120311392 (SDC1)
Proteoglycans [BR:
ctig00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
120311392 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
120311392
NCBI-ProteinID:
XP_039206760
LinkDB
All DBs
Position
Unknown
AA seq
326 aa
AA seq
DB search
MRVSAIAGLSALVFCFQAVLAQSMDTSLPPEDQDSSGDDDDSFSGLSSGIGSSIEDEVIV
SNLPLQESTNTSLMPEVSTSLRDIQTKVQVTDSPVEDYSSPSVFIASIPGFPVTSVVSKE
PPVTFEELDSTTEPDTTKPTVLTTSIPIVHHVSTARITTSRAASTVKFIDIHDISNIDET
HSFGIVPESERNLNSALPTMVSSTARMESSPLPENDIFQEYGSGGQEDFIFSTHEENQIN
VKDLEAENRVIDTETKNAKSEGLMDRKEVLGGVIAGGLVGLLFAGFLVAFMLYRMKKKDE
GSYSLDEPKQSNGGYQKPHKQEEFYA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagggtcagcgcgatagcggggctgagcgccttggtcttttgcttccaagcggtctta
gcgcaatcaatggacaccagtctaccccctgaagaccaggattcatctggagatgatgat
gattcattttctggtttatcatctggtataggttcttcgatagaggatgaagtgattgtc
tccaatcttcccttacaagaaagcacaaatacctctctgatgcctgaagtttctaccagc
ttgagagatatccagacaaaggttcaagttacagatagtcctgtggaagattattcaagt
ccatctgtctttatagcaagcatacctgggtttccagttacttctgtcgtatccaaggag
ccaccagtaacttttgaagagttagactcaactacggagccagacacaacaaaacctact
gtattgacgacaagcatcccaatagtgcatcatgtttccacagccagaattacgacttct
cgtgctgctagcacagtcaaattcattgatattcatgacatatctaatattgatgaaaca
cactcatttggcattgtgccagaaagtgagagaaatttgaatagtgccctacccactatg
gtgtcttctactgctcgaatggaaagctctcctctgcctgaaaatgatatcttccaggaa
tatggttctggtggtcaggaagattttatattttcaacacacgaggaaaatcagataaat
gtaaaggaccttgaagcagaaaacagagtgattgatacagaaacaaagaatgcaaaatct
gaaggattaatggacaggaaagaagtactaggaggagtcatcgctggtggactcgtaggc
ttactatttgctggattcctagttgcattcatgctgtatagaatgaagaaaaaagatgaa
ggaagttattcattggatgagccaaagcaatcgaatggaggctatcaaaaaccacataag
caagaagaattctatgcatga
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