Crotalus tigris (Tiger rattlesnake): 120311436
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Entry
120311436 CDS
T08476
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120311436 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120311436 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120311436 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120311436 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120311436 (COL4A4)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120311436 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120311436 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120311436
NCBI-ProteinID:
XP_039206847
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MNCLYWIKFITGAWWLIIVASVQPSYGGSYIGYCGGEDCSICRCFPEKGSRGKSGQPGVQ
GPIGALGSIGPIGFPGEKGQRGDPGLPGPPGERGNMGPTGVPGFSGLDGMPGLPGYEGPR
GKPGADGCNGSRGDPGFPGEVGCIGPKGSLGIPGQKGEKGNSVYPTGERGDPGPQGMPGR
RGEKGHRGPSGFPGLPGEQGFQGQPGLSGEQGNPGIGVEGQKGEPGDVGPPGSPGQPLLV
GPPSSRLLKGEKGIKGMPGSIGSRGLRGHKGAFAIGDKGDNGIPGFPGEQGIPGSYGSPG
LPGNKGITGTHGIPGQDGLTGIKGDPGEKGQPGPPGSRRTTHTGPKGIQGDPGDPGFSGE
RGTDGLPGSPGDKGRQGEDGVSFPGPKGALGVEGPQGFHGSPGLSAQSSTSPGRPGSPGL
PGFPGVPGQRGLPGPPGVACKGRGSFGEPGDKGQRGSPGERGGKGEKGNPGNCSCGLGPC
GPPGKQGLPGIPGRKGEMGTPGKYGRKGDPGFLGRRGEPGSLGLPGPFGPTGEKGDKGDP
VEVRIKGVKGQRGVPGIRGFPGVNGTAGRAGDEGLTGDKGTQGEDGRAIQGEKGFPGDPG
IPGSRGQMGTPGFGIQGLQGVPGLPGDPGNPGLKGTSGPNGQKGITLPSGRTYPGNPGLP
GFKGIPGPKGLRGPPGPPGSNGFDGFKGQKGRLGTSGNPGPEGVSGEIGDPGDPGERGSS
LDGPPGLPGLPGLQSPKGVPGDTTHSPPGIPGNRGLPGLPGLPGLRGDPGFPGLQGQVGA
PGLPGAKGLQGQKGDTGVMGYPGSPGLACEKMLEGLPGASGSFGAQGPKGLKGIKGPEGD
IGEPGPAGMKGLPGGPGTQGPSGFPGLRGDPGFSGGNGLPGLPGTKGDKGSQGMQGFPGL
PGNAGEMGASGVKGEEGQIGLSGPPGEFGRKGSKGEPGSPGDKGSISVLQVKGQNGEPGL
PGDEGLPGIQGDKGNAGFRGIPGPPGKQAAPGTQKGQPGDEGHSGSQGPLGPPGPPGVTG
VIGFQGQKGDQGAQGPSGPPGHPGLGGQKGSKGSRGDPATHYGQPGKKGPIGVQGSPGLP
GLPGDQGMPGVQGESGKQGSKGLPGNVGSPGFPGVQGAVGFPGPPGEQGRPGFLGTPGFP
GLPGNPGRKGLLGSPGVNGVNGQKGQKGLSGLPGLSKMGPPGCIGEQGPKGNRGEPGLPG
TTQLGPQGEKGLRGPPGKPGVSGSAGRMGQTPENRTCGFPGDQGPAGSDGIRGPPGKPGP
PGKIILIKGDSGDSGTLGPPGVPGPCGKQGTKGIPGNQGRKGSKGLMGKPGLQGSPGVPG
EPGAQGLQGPTGPVGHKGYRGDPGEPGRVDYSSCPKIPGPPGVLGPRGPPGFVGLRGPIG
FPGPPGNKGEEVSLGEQGLEGSLGPPGPHGDQGDMGEKGNTGPQGPSGQTGIPGPPGSAS
KWSSGFLLVLHSQSETEPFCPEGMTRLWTGYSLLYFEGQEKAHNQDLGLAGSCLPVFSTM
PFTYCNVNEVCYYASRNDKSYWLSSAAPLPMMPLSDEEIQPYISRCVVCEAPAQAVAVHS
QDQSIPSCPPNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSSPFIECRGQPGT
CHFFINEYSFWLVTVNNETQFSSSPLSGTIKDEQEQRRNIGRCQVCMKYA
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcttatattggattaaatttattacaggtgcatggtggctaataattgttgct
tcagtccagccatcttatgggggttcatatattggatattgtggtggagaagattgttcc
atttgtcgatgctttcctgaaaaaggctcaagagggaaatctggtcagccaggagtccag
ggtccaattggtgctctgggttccattggacctattggttttccaggagaaaaaggccaa
agaggtgatcctggtctacctgggccacctggtgaaagaggaaatatgggtccaactgga
gttccaggattttcaggtctagatggaatgccggggctaccgggttatgaaggacccaga
ggaaagcctggggcagacggatgtaatggttcaagaggcgatccaggatttccaggagag
gttggatgtattggaccaaaagggtcacttggtatccctggtcaaaaaggagaaaaagga
aattccgtatacccaactggagaaagaggggaccctggacctcaaggcatgcctggtcgt
agaggagaaaagggacacagaggtccatctggattcccaggcctaccaggggaacagggt
tttcaaggtcaacctggtttatcaggtgaacaggggaatccaggaattggagtggaagga
caaaagggagaaccgggtgatgtaggacctccaggatctccaggacagccattattggtt
ggaccgcctagttctagactcttaaagggagaaaagggaataaagggaatgcctggatct
attggctcaagaggattgcgtggccacaaaggtgcatttgcaattggagacaagggtgat
aatgggattcctggttttcctggagagcagggaattcctggctcatatggttctccaggt
ttaccaggaaacaagggtataactggaacacatggaattcctggtcaagatggcttgaca
ggcattaagggggatcctggagagaaagggcagcctggaccaccaggatctcgaagaact
acacacactggaccaaagggtattcagggagacccaggagaccctggattttctggagag
agaggaacagatggattgcctggttctcctggtgacaaaggaaggcaaggggaagatgga
gtcagctttcctggtcccaaaggtgcattgggtgtagagggtcctcaaggctttcatggt
agccctggtctctcagctcaatctagtacatctccaggaaggccaggatctccaggatta
cctggttttccaggagtaccaggacaacggggcttgcctggcccacctggtgttgcttgt
aaggggagagggtcctttggagaaccaggagataaaggtcaaagaggatcacctggagaa
agaggtggaaaaggagagaaaggaaatcctgggaactgctcatgtgggcttggtccttgt
ggtccacctggcaaacaaggtctaccaggaatacctggcagaaaaggagaaatgggaaca
cctggaaaatatggaagaaaaggtgatcccggttttcttggtagaagaggagaaccagga
tccttaggattgccaggtccatttggaccgacaggtgaaaaaggagataaaggtgaccca
gttgaagtaagaatcaaaggggtaaaaggacaaagaggtgttccagggatacgtggattt
ccaggagtaaacggcactgctggcagggctggagatgaaggattgacgggtgataaaggg
actcaaggagaagatggaagagctatacaaggtgagaaaggatttcctggagaccctgga
attcctggctcaagaggtcaaatggggacaccaggttttgggattcagggcctacaagga
gtcccaggcttacccggagatccaggaaaccctggtttgaaaggaacatctggaccaaat
ggtcaaaaaggtattactcttccaagtggaagaacgtatcccggaaatccaggtttacca
ggatttaaaggtataccaggtccaaaagggttaagaggcccacctggcccacccggctcc
aacggttttgatggtttcaaaggccagaagggtagactaggaacatcaggcaatcctggt
ccagaaggtgtaagtggtgagattggtgatccaggtgatccaggtgaacgaggttcaagt
ctggatggccctcctggattgccaggccttcctggacttcaaagtccaaaaggtgttcca
ggtgacaccacccacagccctccaggtatcccaggcaacagaggtcttccagggctacca
ggtttacccggtctaagaggtgaccctggttttcctgggcttcaaggacaagttggcgca
ccaggacttccaggagctaaaggtctccaaggccaaaaaggtgacacaggagtgatgggt
tatcctggatcacctggactggcctgtgagaaaatgttggaggggctaccaggagcatca
ggctcttttggagcacaaggacctaaaggactgaagggtattaaaggtcctgaaggagat
ataggagaaccaggcccagctggaatgaaaggattgccaggtggtcctggaacccaaggg
ccatccggctttccaggcttacgaggagatccaggattttcagggggaaatggcctgcca
ggtcttccaggaacaaaaggagacaaaggatcccaaggcatgcaaggtttcccaggcctc
ccaggaaatgcaggagaaatgggagcatcaggtgtaaaaggagaagaaggacaaattggt
ctgtctggtcctcctggagaatttgggagaaagggttccaaaggtgaaccaggatcacca
ggggacaagggtagcattagtgtcctgcaagtaaaaggacaaaatggagaaccaggcctt
cctggtgatgagggattaccagggatccaaggtgataaaggcaatgctggattcagagga
atcccgggaccaccaggcaaacaagcagctccaggcactcaaaagggccagcctggtgat
gagggacactctggttcccagggcccactaggtcccccagggcctccaggtgtgacaggg
gtaattggttttcaaggacaaaaaggtgatcagggtgcacagggaccatcaggtcctcct
ggacatccaggattaggtggccaaaaaggatcaaaaggtagcagaggtgacccagctact
cattatggtcaacctggcaagaaagggcctataggggtccaaggatcaccaggacttcct
ggattacctggagatcaaggtatgccaggtgttcaaggagaatcaggaaaacagggttcc
aaagggttgcctggaaatgtaggatcacctggattcccaggtgttcagggagcagtagga
tttccaggacctccaggtgaacaaggtagacctggttttttgggaactccaggtttccca
ggattacctggtaacccaggtagaaaaggcttattgggatcacctggagtaaatggtgta
aatggacaaaaaggtcaaaagggtttgtcaggactcccaggtttaagtaaaatgggacct
ccagggtgcataggagaacaagggccaaaaggtaacagaggagaacctgggcttccagga
actactcaactaggtccccaaggagagaaaggtctaagaggtcctcctggtaagccaggt
gtttctggttctgctggccgtatgggtcagactcctgaaaatagaacttgtggctttcca
ggagaccaaggcccggctggctcagatggcattagaggccctccaggcaaacctgggcct
ccaggaaaaattatacttattaaaggagattcaggggactctggtactttggggccccct
ggtgttcctggtccatgtggtaaacagggaactaagggtattccaggaaaccaaggaaga
aaaggctcaaaaggtctaatggggaagcctggtctgcaaggatcgcctggtgtccctgga
gagcctggggctcagggtcttcagggcccaactggtcctgtgggccataaaggttacaga
ggtgacccaggagaacctggaagagttgattattcatcatgtcctaagattccagggcct
cctggagtattaggcccacgaggaccaccaggctttgtaggattaagagggccaattggc
tttcctggacctccaggaaataaaggagaagaagtttcattaggtgagcaagggctagaa
ggctcgctcggaccaccaggacctcatggtgatcaaggtgacatgggagaaaaaggaaac
acagggccacaaggtccttcaggccaaactgggattccagggccaccaggatcagcatcc
aaatggagtagcgggttcctgcttgttttgcatagtcagtcagaaacagagccgttttgc
cctgagggaatgacaagattatggactggatacagcctgctgtattttgaagggcaggag
aaagctcataatcaagaccttggtctggctggatcctgtcttcctgtgtttagcactatg
ccttttacctattgcaatgtcaatgaagtctgctactacgcaagtcgaaatgataaatct
tactggctttcaagtgcagctcctttgcctatgatgcccctctcagatgaagaaatacag
ccctatattagtcgatgtgtagtatgtgaagctcctgcccaagctgttgcagttcatagt
caagatcaatccattccttcttgtccaccaaactggagaagtctttggataggttactca
ttcttaatgcatacaggatctggtgaccaaggaggcgggcaatccctcatgtcccctgga
agctgtctggaggacttccgatcatcaccctttattgaatgccggggtcagccaggaaca
tgtcatttttttattaatgaatacagtttctggctagttacagtgaacaatgagacacag
ttttcatcatctcctctctcagggactatcaaagatgaacaagaacaacggcgaaatatt
ggcagatgtcaggtttgcatgaaatatgcctag
DBGET
integrated database retrieval system
