Crotalus tigris (Tiger rattlesnake): 120311436
Help
Entry
120311436 CDS
T08476
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04382
Cornified envelope formation
ctig04510
Focal adhesion
ctig04512
ECM-receptor interaction
ctig04518
Integrin signaling
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120311436 (COL4A4)
04518 Integrin signaling
120311436 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120311436 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120311436 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120311436 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctig04147
]
120311436 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120311436 (COL4A4)
Exosome [BR:
ctig04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120311436 (COL4A4)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120311436 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120311436
NCBI-ProteinID:
XP_039206847
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MNCLYWIKFITGAWWLIIVASVQPSYGGSYIGYCGGEDCSICRCFPEKGSRGKSGQPGVQ
GPIGALGSIGPIGFPGEKGQRGDPGLPGPPGERGNMGPTGVPGFSGLDGMPGLPGYEGPR
GKPGADGCNGSRGDPGFPGEVGCIGPKGSLGIPGQKGEKGNSVYPTGERGDPGPQGMPGR
RGEKGHRGPSGFPGLPGEQGFQGQPGLSGEQGNPGIGVEGQKGEPGDVGPPGSPGQPLLV
GPPSSRLLKGEKGIKGMPGSIGSRGLRGHKGAFAIGDKGDNGIPGFPGEQGIPGSYGSPG
LPGNKGITGTHGIPGQDGLTGIKGDPGEKGQPGPPGSRRTTHTGPKGIQGDPGDPGFSGE
RGTDGLPGSPGDKGRQGEDGVSFPGPKGALGVEGPQGFHGSPGLSAQSSTSPGRPGSPGL
PGFPGVPGQRGLPGPPGVACKGRGSFGEPGDKGQRGSPGERGGKGEKGNPGNCSCGLGPC
GPPGKQGLPGIPGRKGEMGTPGKYGRKGDPGFLGRRGEPGSLGLPGPFGPTGEKGDKGDP
VEVRIKGVKGQRGVPGIRGFPGVNGTAGRAGDEGLTGDKGTQGEDGRAIQGEKGFPGDPG
IPGSRGQMGTPGFGIQGLQGVPGLPGDPGNPGLKGTSGPNGQKGITLPSGRTYPGNPGLP
GFKGIPGPKGLRGPPGPPGSNGFDGFKGQKGRLGTSGNPGPEGVSGEIGDPGDPGERGSS
LDGPPGLPGLPGLQSPKGVPGDTTHSPPGIPGNRGLPGLPGLPGLRGDPGFPGLQGQVGA
PGLPGAKGLQGQKGDTGVMGYPGSPGLACEKMLEGLPGASGSFGAQGPKGLKGIKGPEGD
IGEPGPAGMKGLPGGPGTQGPSGFPGLRGDPGFSGGNGLPGLPGTKGDKGSQGMQGFPGL
PGNAGEMGASGVKGEEGQIGLSGPPGEFGRKGSKGEPGSPGDKGSISVLQVKGQNGEPGL
PGDEGLPGIQGDKGNAGFRGIPGPPGKQAAPGTQKGQPGDEGHSGSQGPLGPPGPPGVTG
VIGFQGQKGDQGAQGPSGPPGHPGLGGQKGSKGSRGDPATHYGQPGKKGPIGVQGSPGLP
GLPGDQGMPGVQGESGKQGSKGLPGNVGSPGFPGVQGAVGFPGPPGEQGRPGFLGTPGFP
GLPGNPGRKGLLGSPGVNGVNGQKGQKGLSGLPGLSKMGPPGCIGEQGPKGNRGEPGLPG
TTQLGPQGEKGLRGPPGKPGVSGSAGRMGQTPENRTCGFPGDQGPAGSDGIRGPPGKPGP
PGKIILIKGDSGDSGTLGPPGVPGPCGKQGTKGIPGNQGRKGSKGLMGKPGLQGSPGVPG
EPGAQGLQGPTGPVGHKGYRGDPGEPGRVDYSSCPKIPGPPGVLGPRGPPGFVGLRGPIG
FPGPPGNKGEEVSLGEQGLEGSLGPPGPHGDQGDMGEKGNTGPQGPSGQTGIPGPPGSAS
KWSSGFLLVLHSQSETEPFCPEGMTRLWTGYSLLYFEGQEKAHNQDLGLAGSCLPVFSTM
PFTYCNVNEVCYYASRNDKSYWLSSAAPLPMMPLSDEEIQPYISRCVVCEAPAQAVAVHS
QDQSIPSCPPNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSSPFIECRGQPGT
CHFFINEYSFWLVTVNNETQFSSSPLSGTIKDEQEQRRNIGRCQVCMKYA
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcttatattggattaaatttattacaggtgcatggtggctaataattgttgct
tcagtccagccatcttatgggggttcatatattggatattgtggtggagaagattgttcc
atttgtcgatgctttcctgaaaaaggctcaagagggaaatctggtcagccaggagtccag
ggtccaattggtgctctgggttccattggacctattggttttccaggagaaaaaggccaa
agaggtgatcctggtctacctgggccacctggtgaaagaggaaatatgggtccaactgga
gttccaggattttcaggtctagatggaatgccggggctaccgggttatgaaggacccaga
ggaaagcctggggcagacggatgtaatggttcaagaggcgatccaggatttccaggagag
gttggatgtattggaccaaaagggtcacttggtatccctggtcaaaaaggagaaaaagga
aattccgtatacccaactggagaaagaggggaccctggacctcaaggcatgcctggtcgt
agaggagaaaagggacacagaggtccatctggattcccaggcctaccaggggaacagggt
tttcaaggtcaacctggtttatcaggtgaacaggggaatccaggaattggagtggaagga
caaaagggagaaccgggtgatgtaggacctccaggatctccaggacagccattattggtt
ggaccgcctagttctagactcttaaagggagaaaagggaataaagggaatgcctggatct
attggctcaagaggattgcgtggccacaaaggtgcatttgcaattggagacaagggtgat
aatgggattcctggttttcctggagagcagggaattcctggctcatatggttctccaggt
ttaccaggaaacaagggtataactggaacacatggaattcctggtcaagatggcttgaca
ggcattaagggggatcctggagagaaagggcagcctggaccaccaggatctcgaagaact
acacacactggaccaaagggtattcagggagacccaggagaccctggattttctggagag
agaggaacagatggattgcctggttctcctggtgacaaaggaaggcaaggggaagatgga
gtcagctttcctggtcccaaaggtgcattgggtgtagagggtcctcaaggctttcatggt
agccctggtctctcagctcaatctagtacatctccaggaaggccaggatctccaggatta
cctggttttccaggagtaccaggacaacggggcttgcctggcccacctggtgttgcttgt
aaggggagagggtcctttggagaaccaggagataaaggtcaaagaggatcacctggagaa
agaggtggaaaaggagagaaaggaaatcctgggaactgctcatgtgggcttggtccttgt
ggtccacctggcaaacaaggtctaccaggaatacctggcagaaaaggagaaatgggaaca
cctggaaaatatggaagaaaaggtgatcccggttttcttggtagaagaggagaaccagga
tccttaggattgccaggtccatttggaccgacaggtgaaaaaggagataaaggtgaccca
gttgaagtaagaatcaaaggggtaaaaggacaaagaggtgttccagggatacgtggattt
ccaggagtaaacggcactgctggcagggctggagatgaaggattgacgggtgataaaggg
actcaaggagaagatggaagagctatacaaggtgagaaaggatttcctggagaccctgga
attcctggctcaagaggtcaaatggggacaccaggttttgggattcagggcctacaagga
gtcccaggcttacccggagatccaggaaaccctggtttgaaaggaacatctggaccaaat
ggtcaaaaaggtattactcttccaagtggaagaacgtatcccggaaatccaggtttacca
ggatttaaaggtataccaggtccaaaagggttaagaggcccacctggcccacccggctcc
aacggttttgatggtttcaaaggccagaagggtagactaggaacatcaggcaatcctggt
ccagaaggtgtaagtggtgagattggtgatccaggtgatccaggtgaacgaggttcaagt
ctggatggccctcctggattgccaggccttcctggacttcaaagtccaaaaggtgttcca
ggtgacaccacccacagccctccaggtatcccaggcaacagaggtcttccagggctacca
ggtttacccggtctaagaggtgaccctggttttcctgggcttcaaggacaagttggcgca
ccaggacttccaggagctaaaggtctccaaggccaaaaaggtgacacaggagtgatgggt
tatcctggatcacctggactggcctgtgagaaaatgttggaggggctaccaggagcatca
ggctcttttggagcacaaggacctaaaggactgaagggtattaaaggtcctgaaggagat
ataggagaaccaggcccagctggaatgaaaggattgccaggtggtcctggaacccaaggg
ccatccggctttccaggcttacgaggagatccaggattttcagggggaaatggcctgcca
ggtcttccaggaacaaaaggagacaaaggatcccaaggcatgcaaggtttcccaggcctc
ccaggaaatgcaggagaaatgggagcatcaggtgtaaaaggagaagaaggacaaattggt
ctgtctggtcctcctggagaatttgggagaaagggttccaaaggtgaaccaggatcacca
ggggacaagggtagcattagtgtcctgcaagtaaaaggacaaaatggagaaccaggcctt
cctggtgatgagggattaccagggatccaaggtgataaaggcaatgctggattcagagga
atcccgggaccaccaggcaaacaagcagctccaggcactcaaaagggccagcctggtgat
gagggacactctggttcccagggcccactaggtcccccagggcctccaggtgtgacaggg
gtaattggttttcaaggacaaaaaggtgatcagggtgcacagggaccatcaggtcctcct
ggacatccaggattaggtggccaaaaaggatcaaaaggtagcagaggtgacccagctact
cattatggtcaacctggcaagaaagggcctataggggtccaaggatcaccaggacttcct
ggattacctggagatcaaggtatgccaggtgttcaaggagaatcaggaaaacagggttcc
aaagggttgcctggaaatgtaggatcacctggattcccaggtgttcagggagcagtagga
tttccaggacctccaggtgaacaaggtagacctggttttttgggaactccaggtttccca
ggattacctggtaacccaggtagaaaaggcttattgggatcacctggagtaaatggtgta
aatggacaaaaaggtcaaaagggtttgtcaggactcccaggtttaagtaaaatgggacct
ccagggtgcataggagaacaagggccaaaaggtaacagaggagaacctgggcttccagga
actactcaactaggtccccaaggagagaaaggtctaagaggtcctcctggtaagccaggt
gtttctggttctgctggccgtatgggtcagactcctgaaaatagaacttgtggctttcca
ggagaccaaggcccggctggctcagatggcattagaggccctccaggcaaacctgggcct
ccaggaaaaattatacttattaaaggagattcaggggactctggtactttggggccccct
ggtgttcctggtccatgtggtaaacagggaactaagggtattccaggaaaccaaggaaga
aaaggctcaaaaggtctaatggggaagcctggtctgcaaggatcgcctggtgtccctgga
gagcctggggctcagggtcttcagggcccaactggtcctgtgggccataaaggttacaga
ggtgacccaggagaacctggaagagttgattattcatcatgtcctaagattccagggcct
cctggagtattaggcccacgaggaccaccaggctttgtaggattaagagggccaattggc
tttcctggacctccaggaaataaaggagaagaagtttcattaggtgagcaagggctagaa
ggctcgctcggaccaccaggacctcatggtgatcaaggtgacatgggagaaaaaggaaac
acagggccacaaggtccttcaggccaaactgggattccagggccaccaggatcagcatcc
aaatggagtagcgggttcctgcttgttttgcatagtcagtcagaaacagagccgttttgc
cctgagggaatgacaagattatggactggatacagcctgctgtattttgaagggcaggag
aaagctcataatcaagaccttggtctggctggatcctgtcttcctgtgtttagcactatg
ccttttacctattgcaatgtcaatgaagtctgctactacgcaagtcgaaatgataaatct
tactggctttcaagtgcagctcctttgcctatgatgcccctctcagatgaagaaatacag
ccctatattagtcgatgtgtagtatgtgaagctcctgcccaagctgttgcagttcatagt
caagatcaatccattccttcttgtccaccaaactggagaagtctttggataggttactca
ttcttaatgcatacaggatctggtgaccaaggaggcgggcaatccctcatgtcccctgga
agctgtctggaggacttccgatcatcaccctttattgaatgccggggtcagccaggaaca
tgtcatttttttattaatgaatacagtttctggctagttacagtgaacaatgagacacag
ttttcatcatctcctctctcagggactatcaaagatgaacaagaacaacggcgaaatatt
ggcagatgtcaggtttgcatgaaatatgcctag
DBGET
integrated database retrieval system
