Crotalus tigris (Tiger rattlesnake): 120311453
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Entry
120311453 CDS
T08476
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig02010
ABC transporters
ctig04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120311453 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120311453 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ctig02000
]
120311453 (ABCA1)
Transporters [BR:
ctig02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120311453 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Herpes_teg_N
Motif
Other DBs
NCBI-GeneID:
120311453
NCBI-ProteinID:
XP_039206900
LinkDB
All DBs
Position
Unknown
AA seq
2253 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTVQLLIEITWPLFIFFILMSVRLSNPPYEQQECHFPNKA
MPSAGTLPWVQGIICNANNPCFRSPTPGETPGIVGNFNESIVYRLFTDAKRLLKYSQKDT
SIKDVQQVLTKVRKLGKFASGVKVRDFLFVNETFSDFLHHNASLSQPDIDEILNSEVNLQ
QIITSGYRISVEDLCNFTKLPEVVAINNGSRALICSMSKEQLASLERVFQDNMDFIKPLM
KGITFNSTLEDVKGTFETLTQSLGNLLKELVSMRSWSDMRQEVMFLTNMNSTSSSADIYQ
AVSRIVCGHPEGGGLQIKSLNWYEDHNYKALFGSNSSEDDAVDFYDNYTTPFCNNLMKTL
ESSPLSRIIWRALKPLLVGKVLYSPDTPATRTVMSEVNKTFQELGVFHELGGMWEEIKPK
IKTFMEESQEMDLIRILLKSELLWNQHLVSSRWTMEEVAQFLAKHPEDIRPVNGSAYTWR
NAFNETDQAIMTISRFMECINLNKLEAVPDEGWLIRKSMELLDQRRFWAGVIFPEIAPQS
VNLPHHVKYKIRMDIDSVERTNKIKDKFWDPGPRADPFDDMRYIWGGFTYLQDVIEQAII
RTLTGSEKKTGVYVQQMPYPCYVDDTFLRVLSRSMPLFMTLAWVYSVAVIIKGIVYEKET
RLKETMKIMGLNNSILWLSWFISSFIPILMSAGLLTFILKKGNLLPYSDPSVIFIFLSLF
GVVTISQCFLISTFFSRANIAAACGGIIYFTLYLPYVLCDAWQNYIGFSLRIFASLLSPV
AFGFACEYVSLFEEQGIGLQWGNFFASPMEQDSFNLTLSVFMMVLDSLLYGIMTWYIESV
FPGQYGIPRPWYFPFMKSYWFGEEAGGQWLPSHAAGSSEICMEEEPSHLPLGVSIKNLVK
VYRDGKKLAIDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAFILGKDIRS
ELCTIRRNLGVCPQHNVLFDELTVEEHIWFYARLKGLPKKLVEKEMEQMAIDVGLPHKLK
SKTSQLSGGMQRKLSIALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQGRTIILS
THHMDEADILGDRIAIISNGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLSSCRNSSS
TISYLKKDDSVSQSSSDAGLGSDHESDTPTIDVSAISNLIMKHVPKARLVEDIGHELSYV
LPYEAAREGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADENGVDAETSDGTLP
ARRNRVFGDRQSCLRPFTEDDAFDPNDSDIDPESRETDLLSGMDGKGSSQMKGWKLTQQQ
FVALLWKRLLIAKRSRKGIFAQIVLPAIFVCIALVFSLIVPPFGKYPTLELHPWMYDEQY
TFISNDAPQDTSTQKLLSALLNKPGFGTRCMEGYSIPEAPCSVEEEEWRQVPVPQNVMEI
FQKGNWTMENPSPSCICSNSTIKKMLPVCPAGAGGLPPPERTQKTTDILQNLTGRNISDY
LVKTYVQMIRKSLKSKRWVNEARYGGFSLGASGSIVVPRNEEVNDAINQVKKILEITKGG
AAERFLNSFQNFMKGLDTSDNIKVWFNNKGWHAIGAFLNVINNAILRANLQDKENPSNYG
ITIYNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQ
FICGVKPVIYWVANFVWDMCNYIIPATLVIIIFICFQQKSYVSSTNLPVLALLLLLYGWS
ITPLMYPASFIFKIPSTAYVVLTSVNLFIGINASVITFVLELFTSSKFNNINDILKSVFL
IFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWNLVGRNLFAMAIEGVVFFLITV
LIQYRFFIKSRPMNAKLPPVNEEDEDVVRERQRIIGGGGQSDILEIKELTKKYRMKQKPA
VDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTDVTGGDAFLKGNSILSNIEEVHQNM
GYCPQFDAIQELLTGREHLEFFALLRGVPEKEVCKVGEWAVRKLGLVKYAEKYAGTYSGG
NKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEECE
ALCTRMAIMVNGRFRCLGSVQHLKNRFGEGYTIIVRIAGGNPDLTPVENFFKLAFPGSVL
KEKHRNMLQYQLPSSPSSLARIFSILSQNKKKLHIEDYSVSQTTLDQVFVNFAKDQTYDD
HTKDLSLHKNQTVVDVAVLSSFLQDEKVKESCV
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atggcattctggacacagctgggtttgctactatggaagaatttcacttataggagaagg
caaacggtccaactactgattgaaatcacttggccattgtttatcttctttattctgatg
tctgtgagactgtctaatccgccttatgaacaacaggaatgtcattttccaaacaaggcc
atgccttcagctggaacattgccctgggtccaggggattatctgcaatgccaacaatcct
tgctttcgttccccgacacctggagagacacctggcattgttggcaattttaacgaatct
attgtttaccgattgttcactgacgccaaacgcttgctaaagtatagccagaaggacacc
agcatcaaggatgtacagcaagtgttgacaaaagtgcggaaacttgggaaatttgcatca
ggtgtcaaagttcgggattttctgtttgtcaacgagacgttctctgacttcctccatcac
aatgcttccctatcacagcctgatatagatgaaatcctgaattcagaggtcaatctccaa
cagatcattacatctggctaccggataagtgtggaagacttgtgcaatttcaccaaactg
ccagaagtagtggctatcaacaatggcagccgtgccttaatttgctctatgtcgaaagaa
cagcttgcttctctagaaagagtgttccaggataatatggacttcataaagccacttatg
aaagggatcaccttcaattcaaccctggaggatgttaagggaactttcgagacactgacc
cagagcctggggaaccttcttaaagagttagtgagtatgagaagttggagtgacatgaga
caagaggtaatgttcctgaccaacatgaattccacaagttcttctgctgatatctaccag
gcagtgtctcgaattgtttgtggccaccctgagggagggggattgcagatcaagtccctc
aactggtatgaagaccacaattacaaagcattgtttggaagcaacagctctgaagacgat
gcagtggatttctatgataactatactacacctttctgcaataacttaatgaagaccctg
gaatccagcccactttccaggattatctggagggccctgaagcctttacttgttgggaaa
gtcctgtacagccctgatacaccagcaacaaggacagttatgtcagaggtcaacaagaca
ttccaagagctaggtgtcttccatgaacttggaggcatgtgggaagagattaaaccaaaa
attaaaactttcatggaagaaagccaggagatggatctgatccggattttgctgaagagt
gagctcctttggaaccaacacttggtcagttcaagatggaccatggaagaggttgcccag
ttcttggcaaaacaccctgaggatatccgtccagtgaatggctctgcttatacctggagg
aatgcattcaatgaaactgatcaagccattatgactatttcccgttttatggaatgcatc
aatttgaacaagttggaagctgtgcctgatgaagggtggcttatcagaaaatccatggaa
ctgctggaccagagacgattctgggctggcgtaatttttcctgaaattgctcctcagagt
gtgaatttgccccatcatgtcaaatataagattcggatggacattgatagtgtggaaagg
accaacaaaatcaaggacaagttctgggacccaggtcctcgagctgacccttttgatgac
atgcgctacatttggggaggcttcacctacttgcaggatgtaatagagcaagcaatcata
cggactttgacaggctctgagaagaaaactggtgtctatgttcagcagatgccttatcca
tgttatgtggatgacacattcttgcgtgtcttgagccggtcaatgcctctcttcatgact
ttggcttgggtctactcagtagcggtgatcatcaaggggattgtatatgagaaggaaact
cggctgaaagagacaatgaagatcatgggcctcaacaatagcatcctctggcttagctgg
ttcattagtagtttcatccccattctcatgagcgcagggcttctgacattcatccttaag
aaaggaaacttgctgccctacagtgatcccagcgtgatttttatcttcctgtctctcttt
ggtgtcgtaaccatctcacagtgcttcctcatcagcaccttcttttccagagccaacata
gcagctgcttgtggaggaattatctattttactctctatttgccttacgtcttatgtgat
gcctggcagaattatatcggtttctctctcagaatatttgcaagcctactttctcctgtt
gcctttggatttgcctgcgagtatgtttccctgtttgaagaacaggggattgggttgcag
tggggcaatttctttgcaagccctatggaacaagacagtttcaacttgactttatctgtg
ttcatgatggtgctggatagcttgttgtatggcattatgacttggtacattgagtctgtt
tttccaggtcaatatggcattcccagaccttggtacttcccctttatgaaatcctattgg
tttggtgaggaagctggaggacagtggctcccttctcatgctgcaggatcatcagaaatt
tgcatggaagaagagccaagccatcttccccttggggtctccattaagaacttggtgaag
gtttaccgtgatggcaagaagctggctatagatggtcttacactgaatttttatgaaggg
caaattacctccttcttagggcacaatggagcaggaaaaactaccacaatgtccattttg
actggcttattccccccgacctcaggcacggcctttatcttgggtaaagatatccgttct
gaactctgcactatccggaggaatctgggtgtttgtcctcaacacaatgtcttgtttgat
gagctgacagtggaagaacacatttggttttatgcacgcctgaaggggctgccgaaaaag
ttggtggaaaaggaaatggaacaaatggctatagatgttggcttgcctcacaaactcaaa
tctaagacaagccaactttctggtggcatgcagagaaaactttcaatagctctggccttt
gtaggtggttctaaagttgtcattcttgatgagccaacagctggagtggatccatattcc
cgaagagggatctgggagttgctcttgaaatatcgacaaggtcgcactatcattctctcc
acccaccacatggatgaggcagacattcttggagaccgaattgccatcatatctaatggc
aaactttgttgcgttggctcttcattattcctgaagaaccagctgggcacaggatactac
ctgaccttagtcaagaaggatgtagattcttcgctcagctcctgtagaaacagtagcagc
acaatatcttatctgaaaaaggatgacagtgtttctcagagcagttctgatgcaggcctt
gggagcgaccacgaaagtgacactccaacaatagatgtatctgcaatttctaatctgatt
atgaagcacgtcccaaaagcaagactggtggaggacattggccacgagttaagttacgtc
ttgccctatgaagctgcccgagaaggagcttttgtggagctgtttcatgagattgatgac
cgcctctctgacctggggatttccagctatggcatttctgagactaccttggaagagatt
tttctcaaggtggcggatgaaaatggtgtggatgcagaaacttcagatggcacattacct
gctagaagaaaccgagtttttggagaccgacaaagctgccttcgcccgttcacagaggac
gatgctttcgatcctaatgattctgacatagatccagaatctcgggaaactgaccttctg
agtggcatggatggcaaaggatccagtcagatgaagggctggaagctgactcagcaacag
tttgtagctctactttggaagcggctacttattgccaagcgcagcagaaagggcattttt
gcccagattgttctccctgccatctttgtttgcattgctcttgtgttcagtctgattgtt
cctccctttggaaaatatcccaccctcgaattgcacccttggatgtatgatgagcagtac
acatttatcagcaatgatgctccacaagacacctctactcaaaagcttctgagcgctctt
ctcaacaaacctggtttcggaacccgttgcatggaaggatactccattccagaggctcct
tgttctgtggaagaagaagagtggagacaagttccggtgcctcagaatgtcatggaaatc
ttccagaaaggcaactggacaatggagaatccttccccatcgtgcatatgtagcaacagc
actatcaagaaaatgcttccagtgtgccctgctggggctggtggtctacctcctcccgag
agaacccagaagaccaccgatattctgcagaatctgacggggcgcaacatttctgattat
ttggtgaagacttatgtacagatgattagaaaaagtttgaagagtaagcgttgggtcaat
gaggccagatatggtggcttttcattgggagctagtgggtctattgtggttcctcgaaat
gaagaggtcaatgatgccatcaatcaagtgaagaaaatcttggaaattaccaaggggggt
gctgctgaacggtttctaaacagcttccagaacttcatgaaaggcctggacacaagtgat
aatattaaggtgtggtttaacaacaaaggctggcatgccattggtgcctttctcaatgtg
atcaacaatgccattctccgcgccaacctacaagataaagagaatccaagcaactacggc
attacgatctacaatcacccactgaacctcaccaagcagcagctctctgaagttgccttg
atgactacttcagtggatgttttggtctccatctgtgtcatcttcgccatgtccttcgtt
ccagctagctttgtagttttcttaatccaggagcgtgtcagcaaagccaagcatctccag
ttcatatgcggtgtgaaaccagtaatctactgggtggccaattttgtatgggatatgtgc
aactacattattccagcaactttggtcattatcatcttcatctgcttccagcagaaatcc
tatgtatcctcaaccaacctcccagtgttggcacttctacttttgctctatgggtggtcc
ataactcctctcatgtacccagcatcttttatattcaagattcctagcacggcatatgtg
gtgctgaccagcgtaaacctcttcattggcatcaatgcgagtgtcatcacttttgtcctt
gaactattcaccagcagtaaattcaacaacatcaatgacatcctgaagtctgtgttcctc
atctttccacacttctgcttggggcgtggcctaattgacatggtgaaaaaccaagcaatg
gcagatgcccttgaaaggtttggtgagaatcgctttgtctcccctctctcctggaacctg
gttgggaggaacctttttgccatggctatagaaggagttgtgttctttctcatcacggtg
ttgatccagtacaggttctttatcaagtctagacctatgaatgcaaagcttccacctgta
aatgaagaggatgaggatgtggttagagaaaggcagaggatcattggtggtggtgggcag
agtgacatcttagaaatcaaagaattaaccaagaagtacagaatgaaacagaaacctgct
gtggatagaatctgtgttggaatccctcctggagagtgctttggtctcctgggcgtaaat
ggcgcagggaaatcttccactttcaagatgttgactggagacactgatgttacaggagga
gatgcttttctgaagggaaacagtattttgtctaacatcgaagaagtccatcagaacatg
ggctactgtcctcagtttgatgccattcaggagttgctgactgggcgagagcacctggaa
ttctttgcgctcttaaggggagttcctgaaaaagaagtctgcaaggttggtgaatgggct
gtccgtaaactaggccttgtaaaatatgctgaaaaatatgccggcacctacagtggtggg
aacaagcgcaagctgtctactgcaatggccctaattggggggcctcctgtggtcttcctg
gatgagccaactacaggaatggatcccaaagcccgccgcttcctttggaactgtgccttg
agcatcatcaaagagggaaggtctgtggtccttacatctcacagcatggaagaatgtgag
gccctctgcactcgaatggcgatcatggtgaatgggcggttcaggtgccttggcagtgtc
caacacttgaagaacaggtttggagaaggctacacaataattgtacgaatagcagggggg
aaccctgacctaacccctgttgagaacttcttcaagctcgcttttccaggaagcgtgctg
aaggagaagcatcgcaacatgctgcaatatcagctcccgtcctctccatcctctctggct
aggatatttagcatcctttcccagaacaaaaagaaactccacatagaagactactctgtt
tcccagaccacacttgaccaagtatttgtaaactttgccaaggaccaaacttatgacgac
cacacaaaagacttgtcgttgcacaaaaaccagactgtggtagatgtagctgttttgagt
tcctttttgcaagatgagaaggtgaaggaaagctgtgtatga
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integrated database retrieval system
