Crotalus tigris (Tiger rattlesnake): 120312191
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Entry
120312191 CDS
T08476
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120312191
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120312191
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120312191
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
120312191
NCBI-ProteinID:
XP_039208491
LinkDB
All DBs
Position
Unknown
AA seq
1794 aa
AA seq
DB search
MAGSPAGLRGHLVCFLALLLRELLRARADGLVDVLQAFGVQEGKNGVTIAAGICTQRNGS
EETDLAFRLENRTHFITPTRQLFPDGHFPVDFSILATMRALKGSQSFLFSLYDERGVQQL
GVEIGRSPVFLYEDQLGFPVPEDYPHFHRVNLADGKWHRIALSVKGESVSLSIDCEDAIM
LPLKRSKQPVVSIDGVTLLGARRPDEDIFEGDLQQLLLVPDPAAAAQYCQDYMPDCSRQL
IYKLQTQDAEENIPQRKGKKGKGRGKGKGKGRKKGRGKKKRNKESLEKSSLIPASGENET
PTDISPTKAATEFWEKDPDAELGILTSTTMTANFNLTDNYQDLLGEEYLINENTDLNASV
TYRAFEERLDNKDYEDYYDQRGASEAERYDPAEHIEATIIFPEQQPNLKGQKGEAAVIEP
GMIFEGPAGYRGPQGETGPMGSPGPPGFPGDPGEQGPPGHPGLPGADGLRGPPGTMLMLP
FQFRGDLLKGPSVSFQEAQAQAILQQAKLSMKGPPGPMGLTGRPGPPGLPGKSGQKGDSG
DAGPQGSPGIQGPIGPPGKTGKRGRSGADGGRGLPGETGPKGDRGFDGLPGLPGEKGNRG
DIGKPGLPGPPGNDGSKGSEGVQGPRGQPGEAGVRGLPGSRGNPGSHGQPGITGIDGAPG
PKGNMGIPGKPGPSGQQGNPGSHGLPGPQGPIGLPGEKGPPGKPGIPGLAGMDGPPGHPG
REGPAGEKGAQGPSGAAGPVGYPGPRGVKGAFGIRGLKGSKGEKGEDGFPGFKGDMGPKG
DRGDAGPLGIRGEDGPEGLKGQVGPTGEPGHPGLSGEKGKLGVPGLPGYPGRQGPKGSTG
FPGPLGLIGEKGKRGKAGQAGQTGERGPLGISGERGLPGSTGKPGPKGDSGHDGPPGTIG
EKGPTGPQGSNGFSGSKGPPGPIGKDGLPGHPGQRGEPGFHGKTGPPGPSGVIGPQGNTG
ETGPMGERGHPGSPGPPGEQGLPGIAGREGAKGDPGPSGIPGIPGPPGIRGFTGARGAVG
EKGPIGLKGAEGPPGPAGTIGPPGERGPSGAAGGIGLPGRGGNPGPPGPAGEKGAPGDRG
PMGPAGHDGILGPVGLPGPAGPPGLAGEDGDKGEMGGPGQKGSKGDKGDVGPPGPTGIQG
PIGHPGSAGVDGEPGRRGQQGMFGQKGDEGARGFPGVSGPPGLQGMPGLPGEKGESGETG
LMGPPGAPGARGPQGPNGGDGPQGQRGGIGQPGAVGEKGEPGEAGDPGPPGDPGQQGVKG
DVGEKGDSGQSGAAGPPGKKGPPGEDGSKGNLGPIGFPGDPGPTGDPGPPGLDGISGEKG
DVGDPGLPGPPGALGEPGPPGPPGKRGPFGPAGREGRQGEKGTKGELGTEGPSGKMGPVG
PQGPPGQPGSEGLRGIPGAAGEPGLLGAPGQSGPPGPMGPAGLPGLKGDPGYKGEKGHAG
LIGLIGPPGEMGEKGDQGLPGNQGTSGTKGDPGSIGPQGPPGPPGSPGLSGHLGQKGNKG
SLGPIGPKGDLGPPGPPGPPGHPAELQNPIPMGSGRTSRQDWEIEEQRDAPGEGYIDPDA
DGLAEVLAALSSLRDEVEQMRCPVGTLDSPARVCKELQFCHAHLKDGEYWIDPNQGCSRD
AFKVYCNFTAGGETCLFPDKKFEAVRLAAWSKEQPGNWFSTFKRGKKFSYVDADGNPVLV
TQLTFLRLLSAVARQNFTLFCQNMAAWYEADTHSHMKALHFRAFNDVELMHNSTDTPIHA
LYDGCQVRKGQERTVLQIVTQHVEHLPLIDVAVQDFGDANQKFGFELGPVCFSG
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcagccccgcgggactgcggggccacctggtttgcttcctggccctcctgttg
cgagaacttctccgggcgagggcagatggccttgtggatgtgctccaggcatttggcgtg
caggagggcaagaatggggtcaccatcgctgctgggatctgcactcagaggaatggatcg
gaggaaactgacctggccttccgcctggagaatcggactcatttcatcactcccacaagg
cagctctttcctgatggccacttcccagtggacttttcaatattagccacaatgagagca
ctcaaaggcagccaatcttttctgttttccctgtatgatgaacgtggtgtacagcagctt
ggtgtagagattggacgttcccctgttttcctctatgaagaccagctgggttttccagtg
cccgaggactatcctcattttcacagagtcaacttggctgatggcaaatggcaccgcatt
gctctaagtgtgaaaggtgaaagtgtatctttgagcattgactgtgaagatgctataatg
ttacccctgaagcgaagcaagcagccagttgtcagtatcgatggggtcaccttgcttggg
gcacgtcgaccagatgaagacatttttgagggagatctccaacaattactgcttgtgcca
gacccagcagctgctgcccaatattgccaggattacatgcctgattgcagcagacaactc
atctataaattgcagactcaggatgcagaagagaacattccacagaggaagggcaagaag
ggcaaaggcagaggcaaaggaaagggcaagggcaggaagaaaggtagaggcaagaagaag
agaaacaaagagtccctcgagaagtcctcgctcattccagcctcaggcgagaatgagact
ccaactgatattagtccgacaaaggcagctactgagttctgggaaaaggatcctgatgca
gagcttggcatcctcacttctaccactatgacagccaacttcaaccttacagacaattac
caggaccttcttggagaagagtatttaatcaatgagaatacagacttgaacgccagtgtc
acttacagagcatttgaggagagacttgacaataaagattacgaggactactatgaccaa
cgaggggccagtgaagcagagcggtatgatccagctgagcacattgaagccaccatcata
tttcccgagcagcaaccaaatctgaaaggacagaaaggggaggcagcggtaattgaacct
ggtatgatttttgaagggccagctggatatcgaggaccacagggagagacgggtcccatg
ggatcaccagggccaccaggatttccaggagaccctggtgagcagggaccaccaggacac
ccaggtcttccaggagctgacgggctacgtggacctcctggaacaatgctcatgttgcca
ttccagtttcgtggtgatttacttaaaggcccttcagtatctttccaggaggcccaggcc
caggctattttacagcaagccaagctttccatgaaagggcctcctggcccaatgggactc
acgggaaggccaggaccaccaggtctaccaggaaaatcaggacaaaaaggggattcgggt
gacgccggaccccagggttcccccgggatacagggaccaattggacctccagggaaaact
ggcaagcggggtcgttcaggagctgatggtggcagaggactcccaggagaaacaggaccc
aagggtgaccggggctttgatggtctcccaggactccctggagaaaagggaaacagagga
gatataggaaagccaggcctacctggacctcctggaaatgatggttctaagggctctgaa
ggtgtgcaagggcccagaggacagcctggggaagctggtgtacgtggtttgccaggctcg
cgaggtaatcctggttctcatggccagccgggtatcactggtattgatggtgctcctggg
cctaaaggcaacatgggcattccaggtaaaccaggcccatctgggcaacaaggaaaccct
ggatctcacggtttgcccggtcctcagggccccattgggcttccaggagaaaagggtcca
ccaggaaaaccaggaataccaggattggctggaatggatggacctccggggcaccctgga
agagaagggccagctggagagaaaggagctcagggtccatctggtgcagcagggccagtt
ggttatccaggtccacgaggagtcaagggggcctttggaataaggggcctcaaaggcagc
aaaggtgagaagggtgaagatggattccctggcttcaaaggtgatatggggcccaaaggt
gatcggggtgatgccggcccactgggcatacgtggtgaggatggccctgaggggctgaaa
ggacaggtgggacctactggggaaccaggtcatcctggcctgtctggtgagaagggcaaa
ttgggggtgccagggctgccaggctatcctggccgccaaggacccaagggttcgaccgga
ttcccagggcccctaggcctcattggagaaaaaggcaaacgaggaaaagctggccaggca
ggacagactggagaacgtggtcctctgggtatttctggtgaacgtggtttgccaggctct
acagggaaaccaggaccaaagggtgactctggccatgatggccccccagggactatagga
gaaaaggggcccactgggccacagggatccaatggattctcaggatcaaagggaccacca
ggtcctataggaaaagatggtctaccaggacatccaggccagcgtggtgagccaggattt
catggcaaaactggcccaccagggccatcaggtgttattgggccacagggaaacacagga
gaaactggccctatgggggagagaggccacccagggtcccctggtcctcctggagaacaa
ggcctgcccggtattgctggtagggaaggtgccaagggtgatcctggacctagtggcatc
ccaggcattccaggtcctcctggaatcagaggcttcacaggagcccgtggtgctgttgga
gagaaaggaccaattgggctgaaaggagcagaagggccacctggtccagcaggcactatc
ggtcctcctggagaacgaggtccctctggagcagccggaggcattggactaccaggaaga
gggggtaatcccggaccacctggacctgcaggggagaaaggagcaccgggtgatcgagga
ccaatgggtccagctggtcatgatggaatcctaggtccagtggggcttccaggcccagct
gggcctccaggacttgctggagaggacggtgacaaaggagaaatgggtggcccaggacag
aagggaagcaagggcgacaaaggagatgtgggtcctccaggaccaactgggatccagggt
cctattgggcatccaggatctgctggagttgatggggagcctgggcgccgagggcaacag
ggcatgtttggccaaaaaggagatgaaggagctcgtggatttccaggcgtcagtggccca
cctggtttacagggaatgccaggactcccaggtgagaagggtgaaagtggtgaaactggg
ctaatgggcccacctggagctccaggggccagaggcccacaaggtcccaatggtggagat
ggcccacaaggtcagcgtggtgggataggccagcctggtgctgttggtgaaaagggtgaa
ccaggtgaagcaggggatcctggaccaccaggggacccaggccaacagggagtgaaaggt
gatgttggtgaaaaaggagattctggccagtctggagcagcagggccacctggaaaaaaa
ggccccccaggagaagatggatccaaagggaacctgggtccgataggattccctggtgac
ccgggcccaactggagatcctggtcctcctggcctagatggaatttctggtgagaaaggt
gatgtgggcgatccaggacttccaggtccacctggagctttgggggaaccaggtcctcct
gggccaccagggaagaggggaccttttgggccagctggacgtgaaggtcgacagggtgag
aaagggaccaagggtgaacttggtacagaaggtccctcagggaaaatgggaccggtgggc
ccacaaggacctccgggccaacctggttcagaaggtctgcgtggaattcctggtgcagca
ggtgaacctggtttattgggagctccaggacagtcagggcccccaggtcccatgggtcct
gcagggctccctggtctcaaaggtgatcctggctacaagggagagaagggtcatgcagga
ctcattgggttgattggtcctccaggtgagatgggtgaaaaaggtgaccagggactgcca
gggaaccagggaacatcaggcactaagggcgaccctggcagtattggacctcagggtcct
ccaggcccacctggatctcctggcctctcgggccatctgggacaaaaaggcaacaaaggc
tctttgggacctattggaccaaaaggtgatctaggaccaccagggccaccaggaccacca
ggccaccctgctgaactgcagaatccaatacccatgggaagtgggcgcacaagccgccaa
gactgggagatagaagaacagagagatgctccaggggaggggtatattgatcctgatgct
gatggactagcagaagtcttggcagccctgagctctctacgtgatgaggtggagcaaatg
cgatgcccagtgggcactctggacagtccagctagggtctgcaaggagcttcagttttgt
catgctcatctcaaagatggtgaatactggattgatccaaaccagggatgcagccgagat
gccttcaaagtttattgcaacttcacagctggtggagaaacctgcttattccctgacaag
aaatttgaggctgtacgacttgccgcctggagcaaggagcaaccaggaaattggttcagc
actttcaaaagaggcaaaaagttctcttatgtggatgcagatggcaatcctgtgctggtc
actcaactcacattccttcgcttgctgagtgccgttgcccggcagaacttcaccctcttc
tgccaaaatatggctgcttggtatgaagctgacacccacagccatatgaaggcattgcat
tttcgggctttcaatgatgtggagttgatgcacaacagcacagatactcccatccatgcc
ttgtatgatggctgccaggttcgcaaaggtcaggagcggacagttctacaaatagtgacg
caacatgtggagcatctaccattgattgatgtggctgttcaggattttggcgatgccaac
caaaagtttggctttgaacttggcccggtctgcttcagtggctga
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integrated database retrieval system
