Crotalus tigris (Tiger rattlesnake): 120312219
Help
Entry
120312219 CDS
T08476
Symbol
VCAN
Name
(RefSeq) versican core protein isoform X1
KO
K06793
versican core protein
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04514
Cell adhesion molecules
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120312219 (VCAN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120312219 (VCAN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctig00535
]
120312219 (VCAN)
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120312219 (VCAN)
04091 Lectins [BR:
ctig04091
]
120312219 (VCAN)
Proteoglycans [BR:
ctig00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
120312219 (VCAN)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
120312219 (VCAN)
Lectins [BR:
ctig04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
120312219 (VCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
hEGF
ig
EGF_2
cEGF
EGF_CA
Motif
Other DBs
NCBI-GeneID:
120312219
NCBI-ProteinID:
XP_039208549
LinkDB
All DBs
Position
Unknown
AA seq
3093 aa
AA seq
DB search
MMGKITKVKMLKHFLWMYWTLSITCALRKVKVEKSPPVKGLLSGRATLPCFFSTLPTLPP
SYHNISEFLRIKWSKIEQDKGGKDLKETTVLVAQNGNIKIGQGYKGRVSVPSHPEDIGDA
SLTMVKLRASDAGIYRCDVMYGIEDTQDIVSLAVDGVVFHYRAASSRYTMNFKQAQDTCL
ENGATIANPEQLKAAYEDGFEQCDAGWLSDQTVRYPIRQPRVGCFGDMMGKEGVRSYGYR
LPNETYDVYCYVGSINGDVFHVTSPNKVTFKEAQTLCEEHEAVLASTGDLHAAWRNGFDQ
CDYGWLADGSVRYPASVARIQCGGGLLGVRTLYRFENQTGFPYPDSKFDAYCFKRKENVS
DSSTVELNIPLESGSAKSLTELNVIPPKTTLQPYLSSLTSEMVKVKEEKKAPQIINLSTL
LPHTVTDISDLSKMTQSETVLSDLVESIPTQDISDLHEASSESPVEQIEVTPIRTSVDAV
ARHNLSVPLETKEETHIGTQPTKIPVEAKSDNKLTTVVIPKELLTSIYESVEEKEVVLPD
QKLITSSTISKLDKTVSSTAILDENATDTPDSVATSLESKIVSTPAYSTGFEIPVVTTSD
RIRVVHSTDSIEKEEEHTVAPAVSEKMKDTVTFIPIPTASDIFSGSEVSKREGSMFGSES
ATRHMPVATDVNEVEGFFTSYGAEVSSHHLKTPTPDLQQETTETDAKYIWTNEENTTEQQ
PNLDTSREDYPAMVTEGIEINQPFIFTDATKTATPVLISEKDYSSSLIPDTKEDEISKDS
GIVTTHAALTKVIQVIQQESVTRDLIMQTLVTDPASPTVVPELYSLPEHDVAAEGSAYEI
NYTTTEISPGIKIRDYKTITRSEFSPGIIDPKQIATSIPPIEPTTKSEHRSSLDKLVVPI
SREETAPVTKKFDMREVDTSTHSPEGSGTKEENIGMEPISFSVSATSKPMVVTGIATTVS
IAAIDKIPPTSASKPLIIKTQPPLIDREPDEDTSKDVLIIDESISPIKTTTDDDFIGKTV
EPEIDTEYFTSSTITAVSQPTGPPTEVLESQEEPPATSEIDTGLENQSDIDVFVAIPQND
TDSLPGLLDMFGYYIHHELDEPPLDGESVTDEPCTASPEDVSEDILIIDHFYPEIYHLEE
DDSEEVDCENTTAITTSPPLQFINGKQQVTTAPKDIKAEEARSDQILAHSKNVNINETNM
VSDNEFSATMQPNESTGDTAVTQKMRAEYDVMEEVFSGDSETTHKVHEIIYLHGQSLSDS
NEKLIQSEAEHLEDLTVQPESISSASPHTMSIELNEDSEQLIVTASTQGWLPHSTTVSLD
TGDDIVAQHDTSVLQGNYNTTIRHNILNSYINSLTTTSSTNLLNMPEGSVQEDDYKSTSA
LTKPGEQEKHSNEEIFSIDGKITPPKPMPSASQSPASLNKETMFIAEHTVAESFTTDSVT
EIILSTTENQINMEEDKEDSTNSMSLNMENSTAVNTENLFNNNEYFNDNIRVMSEGSIAL
TQTIIPLRTKEITENRSSINEESGDGEFWRKPNREILLGGPTSQVVSIDSQFVNAGFGGI
GSMSQATTQTSVRSEYGSSKGKEIGRPSSDPPLNHAIHTNHTMDVLDTKFYGEATDTKIE
SQESKNETYSQRASDKPEAGVLLPFSDQFVGETSEEVITNIAIQEQTNLFETSSMTNISP
DISVEMKLVPESRETDKTVKHSSSTAQYSIVVANNITLQKGSSEFIVNEGMESLQLEDRK
NISPTTFAQKIDLVDISSGEESINDTSSMMLENYTLTEKEINSKLPLIEPGSGDLDPITY
SSAKNPVSSEFLVQGSKNQINESEEHSILQHPLVTALNISSTTIVTLVNQSTTGEFVNKS
KMEQEMPNVLETKASDKPPHLEAEMYYEEKRKIIETDSVTQQPEISGTSTFNPHAKELQF
DINSVTESLQKYSPSYDKTASTLLINAEKAWLEEKTTPSKDSHMLSSPSTMYRPITTEVN
VPFLSKQGSENEFFMVHTTASGNSATLKESSNALKLDTLHPKSSEEHFSEEKQEEFERHT
DDSKYEFKYPPMLEDNLSSASDEIFPVLSNVHTETSTINWFISEDQNKEKSYQEEEKVPA
ATDGTSQGQAWMFVKHENKTPASELLIESPTTGTIETPETSSLPKVLSDGNHDGSGEGSG
WQDVIEKKSESFTQLPNWELPLLTHPPHYSEIENTSATMDGSQKGSHTHTEKLENTATSD
SDISESFSYESSTNNIKDYEDLIPVAGFKRNYSEDISSFIDIIGTGHGVIPDETTIIDVD
DLKSNANIEDIIDHTTERPGRHSTYNIYTSAMKIENTTPEMLIDDKITGNQGISVVNKFI
HSEPILSDHTPTSEVGSGDVSFFTTETAISQDPPKISILLPILPLLVSSTISSPVSSKEN
TTDLGYATEHTESEKMIQSKSKHPTLSDNQVVANESEIMSGEGQVQMDKQEPVVLPSTLA
YMPLKTGQTLTTHQPEESTVANQLVSQNVTRSEETSYKLYEGIKTELTKSVETDMKNLLL
TTQTPKLSVTVHLLSDVSEHPEEIMQNSSSTDSNKHGLPAPETFREVSADTAVTYKPALK
DLSNNTAFPNVELENRFLESIPTFGGYLQETKEMPKDATKETTVLEEYLSKGVIPSSFFH
SDTEDLLEEETPEKVKELNQLDGNSADGSLLWIHSRPSSIPHENKAGGVFGPDGEASVWP
ISPPPSVDKIVKLQTAQPESTTISSNIVNEYSDPAYNKPTINTEDINANEHVTPPFLLLD
VTNGSDFQIGPGEGSVEGSAIQIPGQDLCKSNPCLHGGTCYPRDTFYICTCMPGFSGDQC
EVDIDECQSSPCRNGATCIDGVSTFTCLCLPSYVGALCEKDTETCDYGWHKFQGQCYKYF
AHRRTWDAAERECRLQGAHLTSILSHEEQLFVNRIGHDYQWIGLNDKMYENDFRWTDGSV
LQYENWRPKQPDSFFSSGEDCVVIIWHENGQWNDVPCNYHLTYTCKKGTVACGQPPVVEN
AKTFGKMKPRYEINSLIRYHCKDGFIQRHVPIIRCQGNGRWDLPKISCMNPSSFQRTYSK
KYYYKNYSPGKVNSFNSSKHFHRWIRTWQDSRR
NT seq
9282 nt
NT seq
+upstream
nt +downstream
nt
atgatgggcaagatcacaaaggtcaaaatgttaaaacattttttgtggatgtattggacc
ttatccataacatgtgctctccgcaaagttaaagtggagaaaagtccaccagtgaaaggc
ttactctctggaagagctaccctcccatgctttttttcaactctgccgactttgcctcca
agctatcacaacataagtgagtttctccggattaagtggtcaaagattgaacaggacaaa
ggtggaaaagatctcaaagaaactacagtattggtggcccagaatgggaatatcaagatt
ggacaaggctacaagggaagagtgtcagttccaagccatccagaagacattggtgatgca
tcattaactatggtgaagttacgtgcaagtgatgctgggatttatcgctgtgatgtaatg
tatggaattgaagatacccaagacattgtttcactggcagttgatggtgttgtgtttcac
tatcgtgcggcttccagtaggtacactatgaatttcaaacaggctcaggacacctgtttg
gagaatggtgctacgattgcaaatcctgaacaactgaaagctgcatatgaagatggattt
gagcaatgtgatgctggctggttgtctgatcaaactgttagatatcctattaggcaacct
agagttggctgctttggggacatgatgggaaaagaaggagtcagatcctatggatatcgc
cttcctaatgaaacttatgatgtctactgctacgttggaagcataaatggtgatgtcttc
catgttacttctcctaacaaggtaaccttcaaagaagcccaaactctgtgtgaggaacat
gaggcagttcttgcttcaactggtgatctacatgctgcctggagaaatggttttgaccaa
tgtgattatggctggctggcagatggcagtgtgcgctatccagcttctgtggcaagaatc
caatgtggtggaggtttacttggagtacgaacgctatatcgctttgagaatcaaactggc
tttccttacccagatagcaaatttgatgcatattgttttaaacgtaaagagaatgtatct
gattcttcaactgttgaactgaatattcctttggaaagtggatctgccaaatcattaact
gaactaaatgtaattcctccaaaaactacacttcaaccttatttatcttcactcacatca
gaaatggttaaagtaaaagaagaaaagaaggcacctcaaatcattaatttatctaccctt
ctacctcatactgttacagacatttctgatttgtcaaaaatgactcaatcagagactgta
ttaagtgacttagtggagagtatacctacccaagatatttctgatctccatgaagcaagt
tctgaaagtccggttgaacaaatagaagtaactccaataagaacttctgtggatgctgta
gcaaggcataacttgagtgtacctttagaaacaaaggaagaaacacatattggtactcaa
cccaccaaaataccagtggaagcaaaaagtgataataaactcacaactgttgtcattcca
aaagaattgctcactagtatttatgaatctgtagaagagaaagaggttgttttgcctgat
cagaagctaataacatctagtaccatttctaagctagataaaactgtatcttctacagct
atcttagatgagaatgccacagataccccagattcagtagcaacttcgcttgaaagcaaa
atagtatctaccccagcttattcaacaggctttgaaataccagtggttacaacatctgac
agaattagagtggtacactcaacagattcgatagagaaggaagaagagcacacagtggca
cctgcagtttcagagaagatgaaagatactgtgacatttattccaatacccacagcttca
gatatattttcaggatcagaagtatcaaaacgtgaaggaagcatgtttgggtccgagtct
gccacaaggcacatgcctgttgccacagatgtaaatgaagtagaagggttctttaccagc
tatggagctgaagtgtcaagtcatcacctaaaaacaccaacaccagatttgcaacaagaa
acaacggaaacagatgcaaagtatatttggactaatgaggagaatacaactgaacagcaa
ccaaacttagatacttcaagagaagattacccagcaatggtcacagaaggtattgaaata
aatcaaccttttatatttacagatgccacaaagactgcaactcctgttttaatttcagag
aaagactatagcagttctttgattccagacaccaaagaagatgagatttctaaagattca
ggtatagttactactcatgcagcactcacaaaagtcatacaagtgattcaacaggaatct
gttaccagagatctaattatgcaaacattggtcactgacccggcttcccccactgttgtt
ccagaattatattcattacctgaacatgacgtagctgctgaaggatctgcatatgaaata
aattataccactacagaaataagtcctggtataaaaataagagattacaaaacaatcaca
cggtctgaattttctcctggaatcattgatcccaagcagatagcaacaagtattcctccc
atagaacccactaccaaaagtgaacataggtcttccttggacaaattggtagtccccatc
tctagagaagaaactgctcctgtcactaaaaagtttgatatgagggaagtagatacttca
actcatagcccagaaggatcaggaacaaaagaagagaacataggaatggaacccatttca
ttttcagttagtgcaacaagcaaaccaatggtggtaactggcattgccaccactgtcagt
attgctgcaatagataaaatcccaccaacttcagcatccaaacctttaattatcaaaaca
cagccacctctgattgatagggagcctgatgaggatacaagtaaagatgtgctgataatt
gatgaatctatttctcccattaaaactactactgatgatgattttataggcaaaacagta
gagccagaaatagatactgaatattttacttcatcaactatcactgcagtttcccagccc
acaggaccacccacagaggttttagagtctcaagaagagcccccagctacttcagagatt
gatacagggttggaaaaccagtctgacatagatgtatttgttgctattccacaaaatgat
acagattcattgcctggacttttggatatgtttggttactacatccatcatgaactagat
gaacccccactagatggtgaatcagtcactgatgaaccctgtacagcaagtcctgaggat
gtttctgaagatatcctaattattgaccatttctatcctgaaatatatcatctggaggaa
gatgatagtgaagaagttgactgtgagaatactactgctatcacaacttctccaccactg
cagtttattaatggaaagcagcaagtgaccactgcacctaaagatataaaagctgaagaa
gcaagaagtgatcaaattctagcacattccaaaaatgtaaatatcaatgaaactaacatg
gtgtctgataatgagttctcggccacaatgcagccaaatgaatcaactggagatactgct
gttacacaaaagatgagagcagaatatgatgtgatggaagaagtctttagtggagattca
gaaactacacataaagttcatgagataatatatctccatggccagtctttatcagacagt
aatgagaaattgatacagtctgaagcagaacacttagaagatttaactgtccagcctgaa
tcaataagttctgcttctccccacacaatgagcatagagctaaatgaagactctgaacag
ttaattgtaacagcttctactcaaggttggttacctcattctaccactgtgtccttagac
acaggagatgacatagtagctcaacatgacacttctgttctgcaaggaaattataataca
acaattagacataatatacttaattcttatataaattcattgacaacaacttccagtact
aatttattgaatatgccagaagggtctgttcaggaagatgattataaatcaactagtgca
ttaacaaaaccaggagaacaagaaaaacattctaatgaggaaattttctcaattgatgga
aaaattacaccacctaaacctatgccttctgcttcacaatctcctgcttctttgaataaa
gagaccatgtttattgctgaacatactgttgcagaatcttttactactgactctgttact
gaaataattttgagcactactgaaaatcaaattaatatggaggaggataaggaagacagt
acaaactctatgtctttaaatatggagaattcaactgctgtcaacacagaaaatttgttt
aataacaatgaatatttcaatgataacatcagagttatgagtgaaggatccatagctctt
acccaaacaatcattcctctcagaaccaaagaaattacagaaaatagatcatccattaat
gaagaatctggtgatggagaattttggaggaaacctaatagagaaatacttttggggggt
cctaccagccaagtggtaagtattgactcccaatttgtaaatgcaggttttggaggaatt
ggtagtatgagtcaagccactacacagacttcagtgaggtctgaatatggaagcagtaaa
ggaaaagaaataggtaggccttcaagtgacccaccattgaatcatgcaattcatactaat
cacacaatggatgtgttggatactaaattttatggggaggctacagacactaaaatagaa
agtcaagaatcaaaaaatgaaacttacagccaaagagcatcagataaaccagaagcaggt
gtgctattgccatttagtgaccagtttgttggggagacaagtgaagaagtgataacaaat
atagcaatacaagagcaaacaaatttgtttgaaacatctagtatgacaaacatttctcct
gacatcagtgtagaaatgaagttagtaccagaatcaagagaaactgataagactgtaaaa
cattccagcagtactgcacagtattccatagtagtggcaaataatataactctgcagaaa
ggaagttctgaattcatagtaaatgaaggaatggaatctcttcagctggaagatagaaaa
aacatttctccaactacctttgcccaaaaaattgatcttgtggatataagctctggagag
gaatcaattaatgacacaagtagtatgatgctggaaaattatactcttacagaaaaagaa
attaatagtaaattaccattgattgaaccaggttctggagacttagaccctataacatac
tcttctgcaaaaaacccagtttcatctgaatttttggtacaaggatctaaaaatcaaata
aatgaaagtgaagaacatagcatacttcagcatccactggtcacagcattaaatataagt
agtaccaccatagtaacattagtgaaccaaagtactacaggagagtttgttaataaatca
aaaatggaacaggaaatgccaaatgtattggaaacaaaagcttctgataaacccccccat
ttggaggcagaaatgtattatgaagaaaaaagaaaaattatagaaacagactcagtaaca
caacagccagaaatttctggtacttctacatttaatccacatgcaaaagaactacagttt
gatattaattctgttactgaatctttacagaaatattccccttcatatgataaaactgca
agcactttattaataaatgcagagaaagcatggttggaagaaaagactactccttccaaa
gacagtcacatgctttcctccccatctacaatgtatagaccaataaccacagaagtgaat
gttccatttttgtcaaaacaaggctcagaaaatgagttctttatggttcatactactgca
tctgggaattctgctacattaaaagaaagttctaatgcattaaaacttgacactcttcat
cctaaaagttcagaagaacatttttcagaggaaaaacaggaagaatttgagaggcacacg
gatgattccaaatatgaatttaaatatccaccaatgctagaagacaatttgtcttcagcc
agtgatgaaatctttccagtgttatctaatgtacatactgagacatctaccataaattgg
ttcatttctgaagatcagaataaagaaaagtcttaccaggaagaagaaaaagtaccagct
gcaacagatggaacttctcaagggcaagcctggatgtttgtgaagcatgaaaataaaact
cctgcttcagaattacttatcgaatcccctactactggaacaatagaaacaccagaaacc
tcttcattgcccaaagtgttgagtgatggaaaccatgatggttctggagaaggatctggg
tggcaagatgtaatagagaaaaaatctgaatcatttactcagttgccaaactgggaacta
ccacttctaactcatcctcctcattattcagagattgagaacacaagtgctacaatggat
ggatcccaaaaaggatcacacacccacacagagaagcttgaaaatacagcaacatctgat
agtgacatttcagagagcttttcatatgagagttccacaaacaacataaaagactatgaa
gatttaatccctgtagctggtttcaaaagaaattattctgaggatatttctagcttcatt
gatattattggaacagggcatggagtaatacctgatgaaacaacaattattgacgttgat
gatttgaaatcaaatgcaaatattgaagacattatagatcatacaaccgaaaggcctgga
agacactcaacgtataatatttatacatcagcaatgaaaattgaaaatacaacacctgaa
atgttaattgatgataaaattacaggtaaccaaggaatttctgtagttaataaattcata
cacagcgaacctatattatctgatcataccccaacatcagaggtgggttcaggagatgtt
tcatttttcacaacagaaactgcaatttctcaggacccacctaaaatatccattctgctt
ccaatattacctcttcttgtcagttctaccatatcatctccagttagttctaaagaaaat
accactgacttaggatatgcaaccgaacatacagaatctgaaaaaatgatacaatccaaa
tctaaacacccaacactgtcagacaatcaagtggtagctaatgaaagtgaaataatgtca
ggagaaggacaagtacagatggataaacaggaacctgtggttcttccttcaacgctagca
tacatgcctctaaaaacaggacaaactttgacaacacatcagcctgaagaaagtactgtt
gcaaatcagcttgtttcacaaaatgtaaccagatctgaagaaacaagctacaagctatat
gaaggaataaaaactgaactcacaaaatcagtagaaacagatatgaagaacttgcttctc
acaacgcaaacacccaaactgtctgtgactgtgcatttactcagtgatgtttctgaacat
ccagaagaaatcatgcaaaattcttcatcaactgattctaacaaacatggtttgccagca
ccagaaacatttagagaagttagtgctgacacagctgtaacttacaaacctgctctgaaa
gatttgtccaataatacagcatttcctaatgtggaactggagaacagattccttgaaagt
atacctacatttggtgggtatctacaggaaacaaaagaaatgccaaaagatgccacaaaa
gaaacaactgttttggaagaatatctttcaaaaggagtgataccatcaagcttttttcat
tctgacactgaagaccttttagaagaagaaactcctgagaaagtaaaggagctaaatcaa
ttagatggaaatagtgctgatgggagtttgttatggatacatagcagaccttcttcaatt
ccacatgagaataaagcaggtggagtttttggtcctgatggggaagccagtgtttggcca
atctcaccgccaccatctgtagataaaattgtgaaacttcaaacagcccaaccagaatca
acaactatttcttctaacattgtaaatgaatattcagatcctgcttataacaaaccgaca
ataaatacagaggatataaatgcaaatgaacatgtaactccaccatttttacttctggat
gttaccaatggatcagatttccagattggtccaggtgaaggttcagttgaaggctcagca
attcagatcccaggccaagatctatgtaaaagcaatccttgcttgcatgggggcacttgt
tacccacgtgacactttctatatctgcacctgcatgccaggtttcagtggtgatcagtgt
gaagtagatatcgatgaatgtcaatccagtccttgcagaaatggtgccacgtgcattgat
ggtgtcagtacatttacttgtctttgtctcccaagctatgttggagcactttgtgaaaaa
gacactgagacctgtgattatggatggcataagtttcaagggcagtgctacaaatacttt
gcccatcgcaggacgtgggatgcagcggagagagagtgccgcctgcagggtgcccatcta
accagcatcttgtctcacgaagaacagctgtttgtaaaccgtataggacatgactatcaa
tggattggcctaaatgataagatgtatgagaatgacttccgctggacagatggcagcgtg
ctgcaatatgaaaactggagaccaaaacagccagatagtttcttttcttctggagaagat
tgtgttgttataatttggcatgaaaatggtcagtggaatgatgtaccatgcaattatcat
cttacttacacatgcaagaaaggaacagttgcttgtggccagccaccagtggtagaaaat
gcgaagacctttggaaaaatgaagccccgttatgaaattaactcattgatcagataccat
tgtaaagatggctttatccagcgacatgttccaataatcagatgccaaggaaatggacga
tgggatttacctaaaattagctgcatgaatccatcttcattccaaaggacttattctaaa
aaatattattataaaaattattcaccaggaaaggtaaactcatttaattcatcaaaacat
tttcatcgttggatcaggacatggcaggattcaaggcgctga
DBGET
integrated database retrieval system
