Crotalus tigris (Tiger rattlesnake): 120312484
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Entry
120312484 CDS
T08476
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ctig03009
]
120312484 (IGHMBP2)
03012 Translation factors [BR:
ctig03012
]
120312484 (IGHMBP2)
Enzymes [BR:
ctig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120312484 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
120312484 (IGHMBP2)
Ribosome biogenesis [BR:
ctig03009
]
Eukaryotic type
Other ribosome biogenesis factors
120312484 (IGHMBP2)
Translation factors [BR:
ctig03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120312484 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
ResIII
Helicase_RecD
nSTAND3
AAA_22
UvrD-helicase
DEAD
AAA_16
SLFN-g3_helicase
Flavi_DEAD
IstB_IS21
AAA
AAA_25
PhoH
DnaB_C
NTPase_1
AAA_5
RL
DAP3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120312484
NCBI-ProteinID:
XP_039209190
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MATLVEEFVSRQMELLKEEREAEISEARAWQEGISLKELQRRGVCLLKLELHCQKTGLYG
HLLVTLQSQKHGSDTELPSNSFGPGDIVGLYEAAGQNNQICTGIVTRTASNSITIAVDEP
QSNLVNLDQENLYCLLKLANDVTYNRLKRALNTLNHYGSGPASDLIDVLFCSSEPSGASD
TRLLKFYNESLDASQKEAVCFSLAQKELAIIHGPPGTGKTTTVVEIILQAVEQGLKVLCC
APSNIAVDNLVERISVHKVRILRLGRPARLLESIQHHSLDAVLLRGDNAQIVADIRKDID
QAFMKTRKTQDKGERKHFLNEIKILRKELKEREEMAMSETLQKAHVILATNTGASSDGPL
KLLPENHFDLVVIDECSQALEASCWIPLLKVRKCILAGDHKQLPPTIISHKAAAQGLSLS
LMERLTQKYGDRVVKMLTVQYRMHQAIMQWASTEMYDGRLSAHCSVAQHLLKDLPGVSPT
EETSIPLLLIDTADCGLFELEVEEEQSRGNPGEIQLSGLHIDALIEAGVKAKDIAVIAPY
NLQVDMLRKHLCHKFPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAI
TRARRHVAVICDSRTVSNHSFLKRLVEYMSTHGEVRTAFEYLDDIVPGNYASKSSMGLRD
QEKRLKCSTSPVPKALGEKAKGRPVQKPRERLTERSLESTSKVTPSETKENESSFKHKAR
ILEFLDSEEVQLDFPSSLNAHDRMLIHQLAEEYGLQHMSTGEGSTRYISICKKDPPTEFS
VGDTLVCQHELIQSCPKEIDAGNEERESGAGPGATDLKTLHVERMQRRRAKKEERVKQNR
ESNVNLQEIIGKKEKNGGKTSSKPQKEIAAEEDFDAMISAAIKADNTCGFSKCKASVTTL
GQLCQHCNRRYCLSHHIPEVHGCGEKAKANARQRISKEGILYPGSGMKDKSLDPTKRAHL
QRCLDQKLNELSNQRKSRRKDREK
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgttggtggaagagtttgtgtcccggcaaatggagttgctaaaggaggaaaga
gaggccgaaatttcggaagcaagagcatggcaagaaggaatctccctgaaagagctgcaa
cgtagaggagtttgcttactgaaactcgaactacactgtcaaaaaactgggctatatggc
catctgcttgtaactttacagtctcaaaaacatggctcagacacagagctaccttccaat
agttttgggcctggtgacatagtgggactttatgaagcagctggacaaaataatcagatc
tgcacaggaattgtcacccgaacggcctccaattcaattacaatcgcagttgatgagcct
cagagtaaccttgtaaatttagatcaggagaatttgtactgtctgttgaaacttgccaat
gatgttacatacaatagactcaaaagggctttaaatacacttaatcactatgggtctggt
ccagcatctgatcttattgatgtgctattttgttcttctgaacctagtggtgccagtgat
acaaggcttttgaagttctacaatgaatccctggatgcctcccagaaggaagctgtttgc
ttttcattggcacagaaggaacttgctatcatccatggaccacctggaactggcaagaca
acaactgtggtggagataatactccaagctgtggagcaaggcttgaaagttctctgttgt
gctccctctaatattgcagttgataacttggtggaaaggatctctgttcataaggtgcga
atcctgcgtcttggtcgcccagctcgtcttctagagtccatacagcaccattcgctggat
gctgtcctattgcgtggagataatgcccagattgtagcagacatccggaaggacattgat
caagcttttatgaaaaccaggaagacccaagacaaaggagagagaaaacattttttaaat
gaaattaagatactgagaaaggaactgaaggaacgagaagaaatggctatgtctgaaacc
ttgcaaaaagctcatgttattcttgcaacgaacacaggtgcttcttctgatggtccattg
aagcttcttcctgagaaccactttgatcttgtggtgattgatgaatgttctcaagctctt
gaagcaagctgttggatcccactgctgaaagttaggaagtgtatcctggctggtgatcac
aaacagctgcctcccacaatcatctctcacaaggctgccgcacaaggcctttctcttagc
ttaatggaacggctgactcagaaatacggggaccgtgttgtgaagatgctcactgtgcag
tatcgaatgcaccaagccataatgcaatgggcttccactgagatgtacgatggtcgcctc
tcagctcactgttctgtcgcacaacatttactgaaagacttgccaggagtgtcccccaca
gaagagaccagtatcccattgctgcttatagatacggctgattgtggcttatttgaactt
gaagtagaagaagaacagtctagaggaaacccaggtgagatacagcttagcggtttgcat
atagatgctttgatagaagctggtgtgaaagccaaagatatagctgtcattgctccttac
aatcttcaggtggacatgctaagaaaacatctgtgtcataaatttccagagctggagatt
aaatccgtggatggcttccaaggaagagaaaaggaggcagttgtcctttcttttgtaaga
tccaatagaaaaggtgaagtgggattcctcgctgaagacaggagaataaatgttgcaatt
actcgtgcccggcgtcatgtggctgtaatctgtgactctcgcactgttagcaaccacagt
tttcttaaacggctggtagagtatatgagcacccacggtgaagtgcgcacagcctttgaa
tacctggatgacattgtacctggaaactacgcttccaaaagttctatgggtctccgtgac
caggaaaaaagacttaaatgcagcacttccccagtcccaaaggctcttggagagaaagca
aaaggaagacctgtccaaaaacctagagagaggctaacagaacgttctttggaaagcacg
agcaaagtcacaccatcagaaaccaaagagaatgaaagctcatttaaacataaagcaaga
atattggagtttctggatagcgaggaagtccaactggatttcccttcgtctttaaatgct
cacgatagaatgcttattcatcagttggctgaagaatacgggctgcagcacatgagcaca
ggagaaggcagcacacgatacataagcatttgtaagaaagatcctcctacagaattctct
gtaggagatactctggtttgtcagcatgaattaattcagagctgtccaaaagaaattgat
gcaggcaatgaggaaagggaaagcggtgctggcccaggggccacagatctgaaaacgttg
catgtggaacggatgcaaaggaggagagccaagaaagaagagagagtgaaacaaaaccga
gaatcgaatgtaaatcttcaggaaataattgggaagaaagaaaaaaatggaggaaaaaca
tctagtaaaccccaaaaggaaattgcagccgaggaagattttgatgctatgatctctgca
gcaattaaagctgacaacacatgtggtttctccaaatgcaaagccagcgtaacaactctg
ggacaactctgccagcattgcaacagacgttactgtctcagccatcatatcccagaggtt
cacggatgtggggagaaagccaaagcaaatgcccggcagagaatcagcaaggaagggatc
ctctatcctgggagtgggatgaaggacaagtccttggatcccaccaagagggctcacctc
cagagatgcttggaccagaaactcaacgaactgtccaaccagcgaaagagtagaaggaaa
gatcgggagaaataa
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