Crotalus tigris (Tiger rattlesnake): 120313609
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Entry
120313609 CDS
T08476
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120313609 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120313609 (MTREX)
03041 Spliceosome [BR:
ctig03041
]
120313609 (MTREX)
03009 Ribosome biogenesis [BR:
ctig03009
]
120313609 (MTREX)
03016 Transfer RNA biogenesis [BR:
ctig03016
]
120313609 (MTREX)
Enzymes [BR:
ctig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120313609 (MTREX)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120313609 (MTREX)
Spliceosome [BR:
ctig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120313609 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
120313609 (MTREX)
Ribosome biogenesis [BR:
ctig03009
]
Eukaryotic type
Pre-60S particles
Helicases
120313609 (MTREX)
Transfer RNA biogenesis [BR:
ctig03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120313609 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120313609
NCBI-ProteinID:
XP_039211626
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MADAFGDELFSVFEDDAASSSGLKETKGTPEAATSSKLGKQRDGKSVASAKIQAKKKRDA
EFNSADITALGKRPKLEDFSTDDLNLADVMPKVKVQAVETIEGCTHEVALPADMDFVALK
ARTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVI
FTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREV
AWVIFDEIHYMRNSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHV
IYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKG
GTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPT
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKIN
NLEQQYNEIEIPNEENVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNED
DDFGWGVVVNFSKKSNVKPNSGELDPLYIAEVLLYCSKESLKNSATEAAKPAKPDEKGEM
QVVPVLVHLLSSISSVRLYIPKDLRPLDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIK
DPGLKKVIQKIEAFEHRMYSHPLHNDSNLETIYKLCERKTQIAVDIKAAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQAT
ALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEENYLSLFRPNL
MDVVYTWTNGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
LYVQYYINMCILKCRIYLQAV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctgttcagcgtgttcgaagacgatgccgcctccagc
tctggcttgaaggaaacaaaggggacacccgaggcagccacttcaagcaagttaggaaaa
caacgagatggcaaatctgtggcctctgcaaaaatccaagccaaaaaaaaacgtgatgca
gaatttaatagtgcagatattacagctttggggaaaagaccaaagttggaagacttctct
acagatgatcttaatttggcagatgtgatgccaaaagtaaaagtacaagctgttgaaaca
attgaaggctgtacacatgaggttgctcttcctgcagatatggacttcgtagccctgaag
gcaagaactggaaaagctgcaaaggaatatccattcattcttgatgcttttcaaagagaa
gctattttgtgtgtggataataatcagtctgttttagtatccgctcatacctcggcaggg
aaaactgtatgtgcagagtatgccattgctttggctttaagagaaaaacagcgtgtgata
tttaccagtcctattaaagctcttagtaaccaaaaatatcgcgagatgtatgaagaattt
caagatgttggcttgatgactggggatgtcaccatcaaccctacggcatcttgccttgta
atgaccacagagatcttgagaagtatgctttacagaggttctgaggttatgcgtgaagtt
gcttgggttatatttgatgaaattcattacatgagaaattcagaacgtggtgtggtatgg
gaagaaaccattattttgctccctgataacgttcactatgtgtttctttctgccactatt
ccaaatgcgcgtcagtttgctgaatggatatgtcatcttcacaaacagccctgccatgtg
atttacacagattacagaccgactcctttgcaacattatatttttccagcagggggagat
ggacttcaccttgtagttgatgaaaatggtgattttagagaagataattttaatacggcc
atgcaggtacttcgtgatgcaggtgatttagccaaaggagatcagaaaggcagaaaagga
ggaaccaaaggtccctcaaatgtatttaagattgtaaagatgatcatggaaagaaacttc
cagccagtaattatattcagtttcagtaagaaagattgtgaagcctatgcacttcagatg
acaaaactggatttcaacacagatgaagaaaaaaggatggttgaggaagtgtttaacaat
gcaattgattgtttgtctgatgaagacaagaagctcccacaagttgaacatgtgcttcca
cttttaaaacgtggtattggaatccatcatggaggcttacttcctattttgaaggaaacc
atcgaaattcttttctctgaagggctgataaaagccttatttgctacagagacttttgct
atgggaataaacatgccagcaaggacagtgctattcacaagtgcccggaaatatgatggg
aaagatttccgatggatttcctcaggtgaatacattcagatgtctggccgtgctggccgc
cgaggcatggatgatcgaggaatagtcattttaatggtggatgaaaagatgagtccaaca
attggaaaacagcttctaaagggatctgctgaccctttaaacagtgctttccatttgacc
tacaacatggtactaaatttgctgcgtgtagaagaaattaatccagaatacatgttagaa
aaatctttttatcagttccagcattatagagctattccaggagtagttgaaaaaattaat
aatttggaacagcagtataatgagattgaaattccaaatgaagaaaatgtgatcatctat
tataaaattagacagcaacttgctaaactgggtaaagaaatagaggaatatattcataag
ccaaaatactgcttgccatttttacaacctggaagattggtaaaagtgaaaaatgaagat
gatgattttggttggggagtggtggttaatttttccaagaaatccaatgtgaagcctaat
tctggtgaactggatccactctatattgctgaagtcctcctatactgtagtaaagagagc
ctgaaaaattctgcaactgaagccgcaaagcctgcaaagcctgatgaaaaaggggagatg
caggttgttcctgtccttgttcatcttctgtcatccatcagcagtgttcgactctatata
cccaaagacttaaggcctcttgataacagacagagtgtattgaaatcaatacaggaagtg
cagagacggtttcctgatggagttcctttgctggatcctatcgatgacatgggcattaaa
gatccaggactgaaaaaagtaatccaaaaaatagaagcatttgaacataggatgtattcc
catccacttcacaatgattctaatttggaaactatatacaaactttgtgaaagaaaaaca
cagattgccgtagacataaaagcagctaaacgggaattgaaaaaagcaaggactgtttta
caaatggacgagctcaagtgtcgtaaacgtgttctcagaagattgggttttgcaacctct
tcagatgtcatagagatgaaaggacgagttgcttgtgaaatcagcagtgcagatgagctt
ttgctgacagaaatgatgttcaatgggcttttcaacgatttatctgcagaacaagcaact
gctttattaagctgctttgtatttcaagaaaattcaagtgaaatgcccaaactaactgaa
caattagcaggccctcttcgtcaaatgcaggaatgtgcaaaaagaattgccaaagtttca
gcagaagctaaattggaagttgatgaggaaaactatctcagtttgttcagaccaaacctg
atggatgtggtatacacatggaccaatggtgcgacatttgctcatatatgtaaaatgaca
gatgtcttcgaaggtagcataattcgatgtatgaggaggctagaagaattgcttagacag
atgtgccaagcagcaaaggccattggaaatacagaactggaaaacaaatttgcagaaggt
ttgtatgtacaatattatataaatatgtgcatcttaaaatgtagaatatatttacaagca
gtttaa
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