Crotalus tigris (Tiger rattlesnake): 120314425
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Entry
120314425 CDS
T08476
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03013
Nucleocytoplasmic transport
ctig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120314425 (UPF2)
03015 mRNA surveillance pathway
120314425 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120314425 (UPF2)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120314425 (UPF2)
mRNA cycle factors
P-body specific factors
120314425 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
120314425
NCBI-ProteinID:
XP_039213430
LinkDB
All DBs
Position
Unknown
AA seq
1292 aa
AA seq
DB search
MPAERKKSASMEEKETSLSNKEKEFGERRSASSRDRAKDDVRLGVKREMLKPAEDKKKKV
EEEKRKKDDKEWKKKDEEKIKLEEEQKRKEEEEKQKLEEEEKKKQEEEMRLQQEEAAAKL
KEKEEAHQLHQEAWERHQARKELRSKNQNASENRPEDNFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVAAIVEAKLKISDVNCAVHLCSLFHQRYVDFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFLAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAADKFNLSFPPSEIISSEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPVPEEHGPGIDIFTPGKTGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQTKDSGRDDSREVKETKENKDIAGTEDLELELENLDINDETLDLDCGDEAE
DLTKKLLDEQGKKQGADSTGAENSDGKQAARKQEDEETSTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVGTLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFSKSDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDHEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTSFGINSDGTPSLLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFQRYVWWKKSLDVWTKDHLFPIDIDYMISDTLELLRPKIKLCNSLDESVRQV
QELEREFLIKLGLMNDKDSKDSMTEGENLEEDEDEEEGGVEIEEQSGNESEINEAEEEEG
SENEDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaagaagtcagccagcatggaagaaaaagaaacatcattaagtaac
aaagaaaaggagtttggagagagacggtcagcgagcagccgggacagagccaaggacgat
gtcaggctgggcgtgaagagagagatgctaaagccagctgaagataaaaagaaaaaagtg
gaggaggagaagcggaagaaggacgacaaggagtggaagaagaaagatgaggagaaaata
aaattggaagaggaacaaaagaggaaggaggaagaggaaaagcaaaaactggaagaggaa
gagaagaagaagcaagaagaagagatgaggctgcagcaggaagaagcagctgccaagttg
aaagagaaagaagaagcccaccagctgcatcaggaagcttgggagcgccaccaagcccgg
aaggagcttcgaagcaagaaccagaacgcctccgaaaaccgtccagaagataacttcttc
agcaggctggactccagcctcaagaagaacaccgcctttgtgaagaagctcaagaccatc
accgagcagcagagggactccttatcccacgactttaacggcctcaacctgagcaagtac
atcgcggaggccgtggccgccatcgtggaggccaagctgaaaatctccgacgtgaactgc
gcggtgcacctctgctcgttgtttcaccaacggtacgtcgacttcgctccctcgctgctt
caggtctggaagaagcatttcgaagcccggaaagaagagaagacgcccaacatcacgaaa
ctcaggacggacttgcgcttccttgccgagttgacgatagttgggattttcacggacaag
gagggcctgtctttgatctatgagcagctgaaaaacattattaacgccgaccgcgagtct
cacacccacgtttcagtggtgattagcttctgccggcattgcggcgacgacattgctggc
ttggtacccaggaaggtgaaaagcgcggcggataaattcaacctgagctttccgcccagc
gagatcattagctcagagaagcagcagccgtttcaaaatctgctgaaagaatactttacg
tctttgaccaaacatctgaaaagggaccacagggaactgcaaaacatcgaaagacaaaac
aggcgtattctgcattctaaaggggaattgagtgaagatcggcataagcaatatgaagaa
tttgctatgtcttatcagaagctattggcaaactctcaatctttagctgatctcctcgac
gaaaatatgccagatctccctcaagacaaaccggtgccagaagaacatggtcctggaatt
gatatttttacccctggcaaaactggcgaatatgatttggagggtggaatctgggaagac
gaagatgccagaaatttctacgagaaccttatcgatttaaaagcgtttgtgccggctatc
ttgtttaaagacaatgaaaaatgttctcagaccaaagattctgggagagacgactcgaga
gaagtaaaagaaactaaggaaaacaaagatatagccggcactgaagatctagaactggaa
ctagaaaatttggatattaatgatgagacccttgatttagattgtggggatgaagcagaa
gatctcacaaaaaaactccttgacgaacaaggcaagaaacagggagcagatagcaccgga
gctgaaaatagtgacggaaagcaagctgcaagaaaacaagaagatgaagaaaccagcacc
ggatcacacctaaaacttatagttgatgctttccttcaacagctcccaaattgtgtaaat
agagacctaatagacaaggcagcaatggatttttgcatgaatatgaacaccaaggctaac
agaaggaagttagtccgtgcccttttcatagttcctcggcagaggctagatttgctgcct
ttttatgcccgactggttgggacattgcacccctgtatgtccgacgtagcagaagatctc
tgttccatgctgaagggggacttcagatttcatgtgagaaagaaggaccagatcaacatt
gagacgaagaacaaaacagtgagattcattggcgagctaactaagtttaagatgttttcc
aaaagtgacacgctgcattgcttaaagatgcttctgtctgacttttcccatcaccatatt
gaaatggcgtgcactttgttagagacttgcgggagattcctcttcagatctccagactcc
catttgaggaccagcgttcttttggagcaaatgatgcggaagaagcaggccatgcatctc
gacgcgcgctacgtcacgatggtggaaaatgcctactattactgtaaccctcctcccgcg
gagaagacggtgaaaaagaagcgccctcctctccaggaatatattcggaagctgctctac
aaggacctctccaaagtcaccactgaaaaggtcctgagacaaatgcgcaaactgccttgg
catgaccacgaagtgaaagattacgtgatatgctgtatgatcaacatttggaatgtgaaa
tataatagcattcactgtgtagcgaaccttcttgccgggctggtcctctatcaagaggat
gttggaattcacgtggtggacggagttctagaggatattcgattaggaatggaggttaac
cagcccaaatttaatcagcggaggatcagcagcgctaagttcctcggcgagctgtacaat
tacagaatggtggagtcggcggtgatatttcgaactctgtactcattcacgtcgtttggg
atcaactctgatggtacaccgagtctcctcgaccccccagagcatctcttccgaattaga
ctggtttgcaccatccttgacacctgcggacagtattttgacaggggatctagcaagcga
aaacttgattgcttcttggtctactttcagaggtatgtttggtggaagaaaagcctggat
gtatggacaaaggatcacctgttccctatagacattgactatatgatcagtgatacatta
gaactgctgagacccaaaataaaactctgcaattctctggacgaatctgttaggcaggta
caagagctggaaagggaattcttaatcaaactaggtcttatgaatgacaaagactctaag
gattccatgactgaaggagagaacctggaggaggatgaggacgaagaggaaggtggagta
gagattgaagaacaatctggaaatgaaagtgaaataaatgaagcagaggaggaggagggg
tctgagaatgaggatgatgaaggagaagaggaggaagaagagaacaccgattacctcact
gactctaataaggagaatgaaaccgatgaagagaacacggaagtaatgattaaaggaggt
gggctgaaacgggtcccgtgcgccgaagatgaagattttattcaggcattggataaaatg
atgctggaaaatttacagcaaagaagcggagagtcggtgaaagtgcaccagttggacgtg
gccatccctttgcatctcaagagccagctaaagaaaggaccacctctcggcggtggggag
ggggagtctgaatccggagacaccatgccttttgtcatgctaacccggaaaggcaacaag
cagcagtttaaaatcctaaacgtgccgatgtcctctcaactggctgccaatcactggaac
caacagcaggccgagcaggaagaacgcatgcggatgaaaaagctaaccttggacatcaac
gaacggcaggaacaggaggactatcaagaaatgatgcagtccttggctcagagacccgct
ccagccaacacaaaccgagaacggcggcctcgttaccagcatcccaagggagctcctaat
gctgatctcatctttaaaactggtggaaggagacgttga
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integrated database retrieval system
