Crotalus tigris (Tiger rattlesnake): 120315229
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Entry
120315229 CDS
T08476
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03013
Nucleocytoplasmic transport
ctig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120315229 (CASC3)
03015 mRNA surveillance pathway
120315229 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120315229 (CASC3)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120315229 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
120315229
NCBI-ProteinID:
XP_039215173
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MADRRRQRASQDSSEEDESDSPPGSAGSSPQSGTHRFGLAGAASTGGATAGTENVEAPVT
VGGSPADSECESEDGIEGDAVLSDYESAEDSEAEEGEYSEEETTKMDLKRDRNDTELRTK
ADKGDEKPESKGTVAGERQSGDGQESTEQVENKIGKKLPKHLDDDEDRKNPAYIPRKGLF
FEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAH
NPDDIKPRRVRKPRFGSPPQRESNWSSERPSKPPRHQSLDSTSVAPRTFINRNSAGTGWM
ASPRAFPKPCGYKDTRPSYRAADVNSQHAPRFSEQSKPESSYRARRSDPIPAREPSPKSE
IPPIQNSPVKKEEVLENQTPPADILQTQPDRPVEKKSYSRARRSRNKAGETGKLADEVPP
PSELIPAPLKTADIIPSPSSAKTANWEVPVEANLDGLEQDMTQLNMTEQNWNQGQPQFIP
PQGLPNQMHIGTAPPPQFNRIEDMGVQGGRAKRYSSQRQRPVPEPAPPVHISIMEGHYYD
ALQFQGPIYTHGENPTPLPPQGVIVQPEMHLSHPGLHPHQAPAPLANAGLYPPPVSMPPG
QQPPPPPPPPPQQLLAPTYFPPPGVMNFGNPSYPYPPGTLPPPPPPHLYPNTQAQSQVYG
GVTYYNTVQQQVQPKPSPPRRASQPVTIKPPPPETDLQFLLGKSVGVGKISLQERVISLQ
RSALGKGLHTISSKGMLMKEFCSFPPLSFLSRMAEMKNPKKGTTFREFCILLISVESQSW
PCGR
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcgtaggaggcagcgcgcttcgcaggatagcagcgaagaggatgagtccgat
tcgccgcctggaagcgcaggttcttccccgcagagcggcactcaccgctttggcttagcc
ggagcggcaagcaccgggggtgctactgctggtactgaaaatgtggaggcgccggtgacg
gttggaggtagcccagccgactcggagtgtgaaagtgaagatggcatagaaggagatgct
gtactgtctgactatgaaagtgctgaggattctgaggctgaggaaggagaatacagtgaa
gaagaaacaactaaaatggacttaaagcgggacagaaatgacactgaattgagaacaaaa
gcagacaaaggggatgagaaaccagaatcaaaaggcacagttgcaggtgaaaggcagagt
ggggatgggcaggaaagcactgaacaagttgaaaacaaaattggtaaaaaacttcctaag
catctagatgatgatgaagaccggaagaacccagcatatatacctcgtaaaggtcttttc
tttgaacatgacctccgtggacagacccaggaagaggaagtccgaccaaaaggtcgccag
cgtaaattgtggaaagatgagggacgatgggaacatgacaagtttcgagaagatgagcaa
gcaccaaaatccagacaagagctaattgctctttatggctatgatatccgctctgcacac
aaccctgatgacatcaaacccaggagggtgcgcaaaccaagatttgggagtccaccacag
agagaatccaattggtccagtgaacgaccaagtaagccaccacgacatcagagtctagac
agtacttctgtggcacctcggacattcattaatcgaaactcagcggggacaggatggatg
gccagcccaagggcatttcccaaaccttgtggctataaagatactcgcccaagttatcga
gctgcggatgtaaatagtcaacatgcacctcgcttcagtgaacagtcaaagcctgaaagc
agttaccgggccagacgatcagatccaatcccagcaagagaaccttctcccaaatctgag
ataccacctattcaaaacagccctgttaaaaaagaagaagttttggaaaatcaaactcca
cctgcagatattctacagacacagccagataggcctgtggaaaaaaaatcatattctcgg
gcaaggaggagtcggaacaaagcaggtgagacaggaaaattggcagatgaagttccacct
ccatcagaattgataccggcaccattaaaaactgctgatattataccatcaccttcttct
gcaaagactgctaattgggaggtacctgttgaggcaaatctggatggtcttgaacaagac
atgactcagttgaatatgacagaacaaaactggaaccaagggcagccccagttcatacca
ccacagggtttgcctaatcagatgcacattggaacagccccaccccctcaattcaacagg
atagaagacatgggggttcaaggtgggcgtgcaaaacgctactcatcacagcgtcagcgg
cctgtcccagaacctgctccaccagtccatataagcataatggaagggcattactatgat
gcgttacagttccaaggtccaatttatacacatggtgaaaatcctactccacttcctcct
caaggggtgattgttcaaccagaaatgcatctttcacatccaggattgcatccacatcag
gcacctgcacctctggctaatgctggcttatatcctcctcctgtctccatgcctcctggg
cagcagccaccaccaccaccaccaccaccaccacaacagctgttagcaccaacctacttt
ccccctcctggagtaatgaattttggcaatcccagttacccctaccctccaggaacactt
ccacccccgccacctccccacctgtatccaaacactcaagcccagtctcaggtgtatgga
ggggtcacctactacaacacagttcagcagcaagtgcagcccaaaccttctccaccccga
agagcctcccagccagtcactatcaagccaccccctcctgagacagatttgcagtttctt
cttgggaaaagtgtcggagtaggtaagatatcgcttcaagaaagagttatttctctgcag
agaagtgcactgggtaaggggcttcatactatcagctccaaaggcatgttaatgaaagag
ttctgctcttttccccccctctcatttctatctaggatggcagaaatgaaaaatccaaag
aaaggaacaacatttagagaattctgcatcttgctgatttcagtagagtcccagagctgg
ccctgtggaagatag
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