Crotalus tigris (Tiger rattlesnake): 120315321
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Entry
120315321 CDS
T08476
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120315321 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctig03019
]
120315321 (XAB2)
03041 Spliceosome [BR:
ctig03041
]
120315321 (XAB2)
Messenger RNA biogenesis [BR:
ctig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120315321 (XAB2)
Spliceosome [BR:
ctig03041
]
Complex B
Other components
Prp19-related factors
120315321 (XAB2)
Complex C
120315321 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
TPR_12
Suf
TPR_8
ARM_TT21_C
TPR_15
ARM_TT21
RPN7
TPR_1
NRDE-2
TPR_16
LTN1_E3_ligase_6th
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
120315321
NCBI-ProteinID:
XP_039215426
LinkDB
All DBs
Position
Unknown
AA seq
852 aa
AA seq
DB search
MPESETVIGKRELFFEEEDLQYEEEILRNPFSVKCWIRYIDFKQNAPKHILNLIYERALK
ELPGSYKLWYNYLKQRRKQVKSKCVTDPCYEEVNNCHERALVFMHKMPRIWLDYCQFLMD
QCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEE
YIEYLHSIDRLDEAAVRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGA
IIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQF
EESMIAAKMETTSEMGREEEDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGKPWEIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEVNGQIEDARTIFEKAT
KVNFKQVDELASVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDSTEPVQNRVYK
SLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYGLFLEEHKYFEESFKAYE
RGISLFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYLLYAKL
EEEYGLARHAMAVYERATQAVLPSEKHDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLSDE
HAREMCLRFADMESKLGEIDRSRAIYSYCSQICDPRTTANFWQTWKEFEIRHGNEDTIRE
MLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLLEQRAEQLAAE
AERDQPRAKEKILFVRSDASRSELAELSKQANPDEIDIDLDDSDESEDNEPDEVQLEQKS
VPSAVFGGLKDD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccggaatcggagacggtgataggaaagcgggagcttttcttcgaggaagaagaccta
cagtatgaagaagagatcttgcgaaacccattctctgtcaagtgctggatccgctatatt
gacttcaagcagaatgctcccaaacatatcctgaacctgatctatgaaagagctcttaag
gaattgccaggaagctacaagctatggtataactatcttaagcagcgacggaaacaagtg
aagagcaaatgtgtaacagatccctgctatgaagaagttaacaactgtcatgagcgtgcc
ctggtcttcatgcataagatgccccggatatggctagattactgccagtttctcatggac
caatgtcgcattacccgtacccgcaggacgtttgaccgggcactcagagctctgcccatc
acacagcatcatcgtatctggccactttacctgaagtttgtgcgactctatccattacct
gagacagctgtacgggtctaccgtaggtacctaaagttgagccctgagaatgcagaggaa
tacattgagtatctgcactccattgaccgtctggatgaagccgctgtccgtcttgcaact
gtggtgaatgatgagcgttttgtttccaaggagggaaaatccaattatcagttatggcat
gagctctgtgatctcatctctcaaaatccagacaaggtgaagtcactcaatgtgggggcc
atcatccgaggtggcctgactcgtttcacagaccagttgggcaagctgtggtgttctttg
gcagattactacatccgcagtggccattttgagaaggctcgtgacgtatatgaagaagct
attcaaacagtgatgacagtacgggatttcactcaagtgtttgacagctacgcccagttt
gaggagagcatgattgctgctaagatggagaccacctctgaaatgggacgtgaggaggag
gatgatgtagatctggaactgcgtctggcacgctttgagcagctgattgcacgccggcct
ctgcttctcaacagtgtcctcctgcgccagaatcctcacaatgtccatgagtggcacaag
cgggtgaagctctatgaaggcaaaccctgggagatcatcaacacatacacagaagcagtg
cagactgttgacccatttaaagccactggaaaaacacatactttgtgggtttcttttgcc
aagttctacgaggtcaatggacagatagaagatgccagaacaatttttgaaaaggccact
aaggtgaactttaagcaggtggatgaactggccagcgtctggtgcgagtatggtgagatg
gagctgcggcatgagaactacgatcaagccctgcgtatcctgaggaaagctacagctatc
ccagctaagaaagcagaatattttgattccacagagcctgtgcagaaccgtgtatataag
tccctcaaggtttggtccatgctggctgacttggaagaaagtctgggcactttcaaatct
actaaggctgtatacgatcgcattttggatctacgcattgccaccccacaaatcattatc
aactacggtctgttcctggaggagcacaaatattttgaagagagcttcaaggcatacgag
agaggcatctccttgtttaagtggccaaatgtttatgatatctggaacacctatctaacc
aaattcattgaccgctatggtggcaagaagttggagcgtgctcgggatctttttgagcag
gcgctggatggctgcccccagaaatatgcaaaaaccatctatctcttatatgccaagctg
gaggaggaatatgggctggcccgccatgccatggccgtatatgagcgagctactcaggct
gtgctgccttcagagaagcatgatatgtacaacatctacatcaagagagcagctgaaatt
tatggcgtcacccacacacgtagcatctatgagaaggcgattgaggtgctatcagatgaa
cacgctcgggagatgtgtctgcgctttgccgatatggaaagcaaattgggtgaaatagat
cgaagtcgggcaatctattcctattgttcacagatatgtgacccccgaactactgccaac
ttctggcagacatggaaagaatttgagattcggcatgggaacgaagacactatccgagaa
atgctacgcattaagcgaagtgtgcaggctacttacaatactcaggttaacttcatggct
tctcagatgctaaaggtttacagcaatgccacaggcacagtgtctgacttagcaccagga
cagagcggcatggatgacatgaagctcttagagcagcgagcagaacaactggcagccgaa
gcagaaagagatcagcctcgagctaaggagaagatcttgtttgtcaggagtgatgcttcc
cgcagtgaattggctgaactttccaagcaggccaaccctgatgagatagacattgatttg
gatgacagcgatgagagtgaagacaatgagcctgatgaggtgcagctggaacagaagagt
gtcccctctgctgtgtttggcggccttaaagatgactga
DBGET
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