Crotalus tigris (Tiger rattlesnake): 120316264
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Entry
120316264 CDS
T08476
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ctig03009
]
120316264 (PDCD11)
Ribosome biogenesis [BR:
ctig03009
]
Eukaryotic type
90S particles
Other 90S particles
120316264 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5
HAT_PRP39_C
Suf
HAT_PRP39_N
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
ARM_TT21
HAT_Syf1_M
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
120316264
NCBI-ProteinID:
XP_039217572
LinkDB
All DBs
Position
Unknown
AA seq
1807 aa
AA seq
DB search
MSSIEENFPRGGIQKKGQEEKAVRQPTVEKDNLFKTQHEEVTRKRKKKYEDQKEPKKLKS
EKKAITKTSAKDFELLSAESLTEGTLLLGCVKKSNQFDLVISLPNGLTGLVKITCICDAY
NELLNKQVATDEPVEELNSLSDLFPPGMLVRCAVVGTEKNAVGHQKIHLTINPSDVNKGL
NPTVVKAGMLLSGCVTSIEDHGYIIDIGIPGTKAFLPRQKAQGYLQSLNKGTELKIGQYL
NCLIEEVKNGGRIIRISINQSEVASAVATEKQNWSLANLLPGLVVKAQVQEVTSSGISLS
FLSSFTGIVDFMHTNSLKTGLFSPNQMVKACILSNNPASKAIRLSLRPVFLQPGIQLSQL
SNDRIGVVVADSKVEMFFKNIGAVFILDDGSHAFSHIKYLPKTSKSFKTEVFKPGSKHTC
RIIDYSLIDDMIIVSLKQHIINAPFLRYHDLHPGQVLEGKVLTLKPLGMQVKVTESIKGF
VPSLHLADVKLKQPEKKYSTGTTVKCRVLASNPETKKLILTLKRTLVNSKLPVLASFEDA
KPGLITHGFIACVKEFGCIVKFYNDMRGLVPTDELGLLPLTVPQEAFYEGQVVKVTVLKC
EPEQERLLLSFRLAEDAISKNTGRTETSKNHEMAYETGQIVDVKILNKKEDGLQAAILPN
NVLAYLPTAQLSDHVSNSKLWWHWLKEGDVLQKVICLHNKGGHIILSRKPALISSMEDEH
LAKSIVDIQPGLLLTGFVRNIMSYGVFVEFPYGLTGLAPKSAMSDKFVTDTKDHFVVGQT
VLARVTSVDEEKQRILLSLKISECSVEGSVSESFALLQQYFNELQEIMSFMSNRDDSNVA
KKLSKLKVGQRLELVVTEVKADGSAVFSGPHVSDLTVIANHSQLGGRSILDGQKVKAVII
CVDLLTSKIYVSLQEELLSLKSKKLILNSQYEAVVQHVATEYAVVSLLGTGRLIAIPVAS
HLNDTFRFDSEKLKMGQSVKVVLKSTQIGDHGMLFAVHDSGKKKNVIRSCRESETLENTS
LVTKQLPSSGDIVNGIVKSVKPTHVLVAFNDRLTGSIHASQILDNVIVGTFPTSLLKVGQ
KITARVIGGRGIKSHKYLPITHTHFTHTFLELSIRPSALKEESKAALTAENDSPEETPKS
GQTVTCYVTKYNILKKRLEVEVTSTIRGRVPQLLLFSNPKDIKHARKSFKKGQALTATVA
DCDISGTKLSLSLTGIHSLEKGTIALCTVKRIIPHVGLHVILPFGRIGKISLFHLNDSYT
EQPLEDFSVGKIVRCYILSVEDHAVKVSFRPSRINPKGHHKVEDPEIVSLDNIQNGQLIR
GYVKSITASGISLGLSDSVVGQISLQYVTPLCMKYIHIDQLLTAKVLSINREKNLVELSL
LPEDTGKPSFIPCDEKLCSEKDTLSQKSRNQRRKLSESEQEVMPAKKRAYCTEDGDSGVE
VYYREEEEKEKKHEKKSKLGKEVPRLKVSTSFMWEEGLNVLDGTTLIPTEHSSDSEEEND
AESMAKKQTKKKQELEKQKAEKELSKLEAALMDPKRQPQTADDFDRLVVSNPDSSILWLQ
FMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEEGLMKVFERA
VQYNEPLKVFQQLADIYSASEKHKEADDVYNTMLKRFRQERSVWVKYTTFLLKRGLVEAA
HRLMPRALKCLPDKEHVDVISKLAQLEFQFGDAEHGKALFENILSTYHKRTDIWSVYIDV
MIKHGSQKEVRDIFERVIHLNLTAKKMKFFFKRYLEYEKKYGTVETIQAVKAAALEYVQS
KNNLAES
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctatagaggagaattttccaagaggtggtatacagaagaaaggacaggaagaa
aaagcagtcagacaaccaacagttgaaaaagataatttattcaagactcaacatgaagaa
gtaactcggaaaagaaagaaaaaatatgaagatcaaaaggaaccaaaaaaacttaagtct
gagaagaaagctattacgaaaaccagtgctaaagattttgaacttttgtcagcagagtct
cttacagagggaacactgctgttaggatgtgtgaaaaagagtaatcagtttgatctggtg
atcagcttgccaaatggtcttactggacttgtgaaaataacttgcatatgtgatgcctat
aatgaattgctaaataagcaggtggccactgatgagcctgtggaggaactgaattctctc
tcagacttgttccctccaggaatgttggtaagatgtgctgtggtaggcacagagaagaat
gctgtgggacatcagaagatacacttaaccattaatccaagcgatgtcaacaaaggcttg
aatcctacagttgtgaaagcaggcatgctactctctggatgtgtaactagtatagaagac
catggttacattattgatataggtattcctggaacaaaagcatttcttcctcggcagaaa
gcccagggctatctgcaatcactcaacaaaggaactgaactaaagatagggcaatatctg
aactgccttattgaagaagtgaagaatggtggaagaataatccgcatatccatcaatcag
tctgaggttgcttcagccgttgccacagaaaaacaaaactggtcactcgccaacttgcta
cctgggctagtggtgaaagcccaggttcaggaggtgacttcttctggaatttctttaagt
tttctctcttcctttactggaattgtggatttcatgcacacaaattctctaaaaacagga
cttttctcaccaaatcaaatggtgaaagcctgcattctttcaaataatcctgcttccaag
gcaattcgcctttctttgcgcccagttttccttcagcctggcatccagcttagccaactt
tccaatgatcggattggtgtggtagtagcagactcaaaagtagagatgtttttcaaaaac
attggtgctgttttcattctggatgatggcagtcatgctttttcacatataaagtatctt
ccaaagacttccaaatctttcaaaactgaggtgtttaagcctggaagtaaacatacatgc
cgaattattgactacagcttgatcgatgacatgatcatagtgtctctcaaacaacatatt
attaatgctccatttctgagataccatgatttacatcctgggcaagtgctagaaggaaaa
gtgttgactctgaaaccgttgggcatgcaggtgaaggtcactgagagtatcaaaggcttt
gtccccagtttacatcttgcagatgtgaaattgaaacagccagagaagaagtatagcacg
gggactactgttaagtgtcgggtacttgcctccaatcctgaaacaaagaagcttattctg
actctcaagagaacccttgttaattccaagctccctgtccttgccagttttgaagatgcc
aagccaggcctgatcactcatggttttattgcgtgtgttaaggaatttggctgcattgtg
aaattctataatgatatgaggggcttagtacctactgatgaacttggtttgctcccctta
actgttccccaagaagccttctatgaaggccaggtagtcaaagtgactgtattaaaatgt
gagcctgagcaggaaagattgttgctttcattcagattggcagaggatgctatttcaaag
aacactggaagaacagaaacttcaaagaaccatgaaatggcatatgaaactggacagatt
gtagatgtaaaaattctgaacaagaaagaagatggcctacaagctgcaatcctacccaac
aatgttttggcctaccttcccacggcacaactttctgatcacgtgtccaatagcaagttg
tggtggcattggctcaaggaaggtgatgttctccaaaaggttatatgcctccataacaaa
ggaggtcacattatcttgagtagaaagccagcattgatttcctctatggaggatgaacat
ttagcgaagagtattgttgatatccagcctggattactgcttactggctttgtgagaaac
atcatgtcttatggtgtatttgtggagtttccttatggtttgactgggctggcccccaaa
tcggcaatgagtgacaagtttgtgacagacaccaaagaccattttgtggtaggtcaaact
gtacttgccagggtgaccagtgttgatgaggagaagcagcgcatcttgctgtccctgaag
atatcagagtgctctgttgaggggtctgtttctgagagctttgccctactgcaacagtac
tttaatgaactgcaggagattatgagcttcatgagcaatagagatgattccaatgtggct
aagaaactctccaaattaaaagtggggcagaggctagaactggttgttactgaagttaag
gctgatggttcagccgttttcagtggtccacatgtttctgatttgactgtaatagccaat
cacagccaacttggaggcagaagtattcttgacggtcaaaaagtaaaagctgtaattatc
tgtgttgatcttctaacatcaaagatctatgtatctcttcaagaggaactgctgtctctc
aaatccaagaagttaatcctgaattctcaatatgaggctgttgtacaacacgtggccaca
gagtatgcagttgtttccttgttaggaacaggtcggctgattgcaatcccagtggcttcc
cacttgaatgacacattccgatttgattctgaaaaactgaagatgggacagtcagtcaaa
gtggttctgaaaagcacacagattggtgatcatgggatgttatttgctgtacatgattca
gggaagaagaagaatgtaatcagatcatgtcgtgaatcagagacactagagaatacctca
cttgtaacaaaacagttgccaagctcaggagacatagtcaatggaattgttaagtctgtc
aaacccactcatgtcttagtggcatttaatgataggttgactggctccattcatgcatcc
cagattctggataatgtgattgtaggcacgtttccaacatcattactaaaagttggacag
aagattactgctcgggtgattggaggcagaggcattaaaagtcacaaatatctgcctatc
acccacacccatttcacccatacattcctagagctcagtatccgaccaagtgcactgaaa
gaggaaagtaaagcagccttgactgctgaaaatgacagcccagaagaaacaccgaaatct
gggcagacagtgacatgctatgttacgaagtacaatatattaaagaaacggctggaggtg
gaggtcacttctaccatcagagggagagttccacagctgctgcttttttcaaatcccaag
gatataaaacatgctaggaaaagcttcaaaaaaggacaggctttgactgcaacagtggca
gattgtgatatttctggaaccaaactctctctgtcgctaacaggcattcattcattggag
aaaggaacaattgcactttgcactgtgaaacgaattattccacatgttggtttgcatgtt
atccttccatttggaaggattggtaaaatcagtcttttccatctaaatgattcatacaca
gagcagccacttgaagacttcagtgttggaaaaattgtcagatgttatattctttctgtt
gaagaccatgcagtaaaagtatcctttcggccatccaggataaatcctaaaggccatcat
aaagttgaagatcctgaaattgtttcccttgataatattcagaatggtcaactcatcaga
ggttatgtcaaatccattacagcatcaggcatctctttggggttatcggattcagtggtg
ggtcaaatttcccttcagtatgtcaccccactctgtatgaagtacatacatatagaccag
cttcttactgccaaagttctcagtataaacagagaaaaaaaccttgtggagctctctctc
cttcctgaagacacagggaagccaagctttattccatgtgatgaaaagctgtgtagtgaa
aaggatacactctcccagaaatcaagaaatcaaaggaggaagctttctgaaagcgagcag
gaggtaatgccagcaaaaaagagagcttattgcactgaggacggtgatagtggtgttgag
gtttattatcgggaggaagaggagaaggaaaagaagcatgagaagaagtctaagctagga
aaagaagttccaagactgaaggtttcaaccagctttatgtgggaggagggcttaaatgtg
ctggatggaaccacattgattccaacagagcacagctcagacagcgaagaagaaaatgat
gctgaatccatggccaaaaaacaaacaaaaaagaaacaggagctggagaagcaaaaggca
gagaaggaactctccaagctggaagctgccctgatggatcccaagcgacagccgcagaca
gcggatgactttgaccgcttggtcgtcagcaatcccgacagctccatcctttggttgcaa
ttcatggcttttcatctccaagctacagagatagaaaaagctagagctgttgcagaaagg
gcactaaaaacaatctcctttagagaggaacaagaaaagctaaatgtgtgggttgctttg
ctaaacctggagaacatgtatggcacagaggaaggactgatgaaagtttttgaaagagca
gtccagtacaatgagcctctgaaggtatttcagcagttggcagacatctacagcgcctct
gagaaacataaggaagctgatgacgtatacaacacaatgctgaaacgcttccgtcaagaa
agatctgtttgggtaaagtataccacttttcttctgaagcgtggtttggtggaggcagct
cacagacttatgccacgggcactgaaatgcttgccagacaaagagcatgtggatgtgatt
tcaaagttggcacagttagagtttcagtttggtgatgcagaacatggcaaggccctgttt
gaaaacatcctgagcacataccacaaacgtacagacatctggtcagtgtacatagatgta
atgataaaacatggcagccaaaaagaagtccgggatatttttgaaagagtgattcaccta
aacttaacagcaaagaagatgaagtttttctttaaacgctatctggagtatgagaagaag
tatggcactgtggaaacaatccaggctgtgaaggcagcagcattggagtatgtgcaatcc
aagaacaatcttgctgagagctaa
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integrated database retrieval system
