Crotalus tigris (Tiger rattlesnake): 120317266
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Entry
120317266 CDS
T08476
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120317266 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctig00536
]
120317266 (COL5A2)
Glycosaminoglycan binding proteins [BR:
ctig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120317266 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
120317266
NCBI-ProteinID:
XP_039219646
LinkDB
All DBs
Position
Unknown
AA seq
1423 aa
AA seq
DB search
MIQCLEPLDCENPRVSPGECCPTCPNTARTGFEASIGRGLKGQKGEPGVVPVVTGTRGRP
GQSGPPGSQGPRGARGPKGRPGARGPPGVDGEPGVPGQPGDPGPPGQPSTGPDGISRPFA
SQMTEQDDAFSQMMMPGPVGPVGPRGAPGNHGKPGPIGPTGPPGELGDPGSMGPPGVRGP
EGPPGKPGEDGEPGRAGQPGEVGFPGSPGARGFPGTPGHQGLKGPRGEKGRDGPKGEIGA
LGSKGESGPSGQMGGIGPMGPRGMAGERGRIGPQGVPGARGSHGMPGKPGPAGPLGIAGS
PGFPGIPGMKGEAGPTGARGPEGPQGPRGETGARGPLGLFGLPGALGTDGSPGTKGPSGS
PGVSGPLGLSGPPGSPGPQGSTGPPGIRGQMGDPGVPGFKGEAGPKGEPGPHGLQGPIGP
VGEEGQRGPRGDPGSVGAPGSVGERGPPGNRGFPGSDGLPGPKGAQGERGLAGASGPKGS
QGDPGRMGEPGLPGARGLTGNPGVSGPEGKLGPLGAPGEDGRPGPAGPIGIRGQPGSMGL
PGPKGSSGDPGKPGEAGNAGVSGQRGAPGKDGEVGPAGPVGPHGPAGERGEQGPPGPTGF
QGLPGTPGPPGEGGKPGDQGVPGDSGALGHLGPRGERGHPGERGNPGSPGLQGEKGMAGG
QGPDGPKGNPGPSGASGDQGPPGLQGMPGERGLAGTPGPKGDRGSIGEKGGEGTAGNDGA
RGLPGPLGPNGPAGPAGEKGEPGPRGLVGPAGSRGNPGSRGENGPTGPVGFAGPQGPDGQ
PGVKGEPGEPGQKGDAGSPGPQGLSGSHGPPGPPGVPGLKGGRGTKGPPGATGFPGSAGR
VGPPGPTGAPGPVGPLGEPGKEGPPGVRGDPGAHGRVGDRGPAGPSGGPGDKGDSGDDGQ
HGPDGPPGPSGTTGQRGIVGMPGQRGERGMPGLPGSAGTPGKQGPTGPTGDKGPSGPIGP
PGAHGPVGEAGPEGPAGNDGTPGRDGAVGERGDRGEPGPAGFPGSQGIPGTPGPVGSPGD
SGQRGEPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGP
PGPTGEQGSAGIPGPFGPRGPPGPVGPLGKEGNPGPHGPVGPPGVRGTLGEAGPEGPPGD
PGPPGPPGPPGHLTAAIGDIMGHYDDGLPDPLPEFTEDEAAPDDSNKTDPGVHATLKSLS
SQIETMRSPDGSKKHPARTCDDLRSCHPSKKSGEYWIDPNQGCVEDAIKAFCNMETGESC
IAANPAIIPRKTWWTSRSSDLKPIWYGLDMNRGSQFVYGDNQSPNTVITQMTFLRLLSKE
ASQNITYHCKNSIGYMDDQTKNLKKAVVLKGANDHDIRAEGNNRFRYTVISDTCSKHNGN
VGSTVFEYKTQNVARLPIIDIAPVDVGGTDQEFGIEIGRVCFV
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgattcagtgtctcgaaccactagattgtgaaaacccacgggtttcccctggagagtgt
tgtcctacatgcccaaacacagcccgaactggatttgaagcttctatcggtagaggactg
aagggtcaaaaaggagaacctggagtagtaccagtggttacaggtacaagaggacggccg
ggacaatctggacctccaggttcacaaggtccaagaggagctcgaggacccaaaggaaga
ccgggtgcccgtggccctccaggagtagatggggaacctggtgtacctggacaacctggt
gaccctggacctcctgggcaaccatccactggaccagatggcatcagcagaccatttgca
tctcagatgacagaacaagatgatgccttttcacagatgatgatgcctggtccagtgggt
cctgtgggtccaagaggagctccgggtaatcatgggaaaccaggtcctattgggcccaca
ggtcctccaggtgaacttggtgacccaggatccatgggtccacctggtgttcgtggccca
gaagggcctccaggaaaacctggtgaagatggtgaacctggcagagcagggcaacctggg
gaagttggatttccaggatctccaggagctcgaggttttcctggtacaccaggtcatcaa
ggtctaaagggccctagaggagaaaagggacgtgatggtcctaaaggtgaaattggagcc
cttggatctaagggtgaatcaggtccatcagggcagatgggtggaataggtcctatgggt
ccccgagggatggcaggagaaagaggacgaattggaccacaaggcgttccaggggcacgt
ggttcacatggtatgcctgggaaaccagggccagcaggtcctcttggtatagctggttca
ccaggttttcctggtatacctggcatgaagggtgaagctggtcccacaggtgcacgtggt
ccagaaggtcctcaaggaccaagaggagaaacaggcgcccgaggtcctctaggattattt
ggtcttcctggtgctttaggtacagatggctccccagggacaaaagggccttcaggatct
ccaggagtttcagggccacttggcttatcaggtccacctggttctccaggaccacaaggc
agcacaggccctcctggcattcgaggacaaatgggagatcctggcgttccaggtttcaaa
ggagaagctgggcccaaaggagagcctggtccgcatggcctccaaggaccaattggacct
gttggtgaagaaggacaaagaggtcctcgtggtgatccaggatcagttggtgctcctgga
tctgttggagaaaggggtccacctggcaaccgtggctttccgggatctgatggtttgccg
ggaccaaagggcgctcaaggggaacgtggtcttgcaggggcttcaggccctaaaggaagc
caaggagatcctggccgcatgggtgaacctggtctaccaggtgctaggggtctgacaggg
aatccaggggtctcaggtccagaagggaaacttggtcctttgggtgctccaggagaagat
ggtcggccaggccctgcaggtccaattggaattagaggccagccaggcagcatgggtctt
cctggaccaaaggggagcagtggggatcctggaaaacctggagaagcaggaaatgctggt
gtctcagggcagagaggggcacctggtaaagatggtgaagttggccccgctggtcctgtt
gggccccatggaccagcaggagaaagaggagagcaaggtcctccaggtcctacaggcttt
cagggtttacccggtaccccaggccctccaggagaagggggaaaaccaggtgatcagggt
gttcctggtgattccggagctctaggtcacttaggtccaaggggagagcgtggccatcct
ggtgaaaggggaaacccaggatcacctggccttcagggggaaaagggaatggctggtggt
caaggtcctgatggtccaaagggtaatccagggccctcaggagcatctggggatcaggga
cctcctggtcttcagggaatgcctggagagagaggcctggctggaacacctggccccaag
ggtgatcggggtagcataggagaaaaaggaggtgaaggcacagccggcaatgatggggcc
agaggactcccaggtccattaggcccaaatggccctgcaggtccggctggtgaaaagggt
gaacctggtcctcgaggtttagttggccctgccggctctcgtggaaatcctggctcccgt
ggtgaaaatggcccaactggcccagtgggatttgctggccctcagggtcctgatggtcaa
cctggtgtcaaaggtgaacctggggagcctgggcagaaaggagatgctggatccccagga
cctcaaggtctttcaggatctcatggtccaccaggcccccctggggttcctggactcaaa
ggaggccgtggtacaaaaggaccccctggtgctacaggttttcctggatctgctggaaga
gttggacccccaggacctacaggagctcctggtccagttgggcctcttggagaaccaggc
aaagaaggtcctccaggtgttcgtggagatcctggtgctcatgggcgagtaggagataga
ggcccagcaggaccatctggcggccctggagacaaaggagattcgggagatgatggacaa
catggtcctgatggccccccaggtccgtctggaactactgggcagaggggcattgtggga
atgccaggccagcgtggagagaggggcatgcctggcctgccaggctctgcaggaactcct
ggaaaacaaggtccaactggaccaacaggggacaagggtccttctgggcctattggtcct
ccaggtgctcatggaccggtgggtgaagcagggccagaaggtcctgctggtaatgatggc
acacctggacgagatggagctgttggtgaaaggggtgatcgtggtgaacctggacctgca
ggatttcctggttctcagggtattcctggcactccagggccagttggctctccaggggat
tcgggacaaagaggtgaaccaggttcacgaggcccagtaggtccccctggccgtgctgga
aaacgaggtttgcccggcccccaaggtccccgtggtgacaaaggcgacaatggtgatcga
ggtgacaggggacagaaaggtcatcgaggtttcactggcctgcaaggtctccctggacct
ccaggacctactggtgaacaaggcagtgctgggattccaggcccatttggcccaagaggt
cccccaggtccagttggacctttaggtaaagaaggaaatcctgggccacatggaccagtt
gggcctcctggtgtaagaggaactttaggagaagcaggacctgagggtcctcctggtgat
cccggtcctccaggcccaccaggtccccccggacatcttactgctgcaattggtgacatt
atgggacattatgatgatggtctaccagacccactaccagagttcactgaagatgaagct
gctccagatgacagcaataaaacagatccaggagtccatgccacactgaagtcattgagt
agccagatcgaaacaatgcgcagccctgatggatctaagaagcacccagcccgtacttgt
gatgatttaagatcatgtcatccatccaaaaagagtggagaatactggattgaccctaat
cagggctgtgtagaagatgcaatcaaagcattctgcaacatggaaacaggagaatcatgt
atagctgcaaatccagctattattccacgtaagacgtggtggacaagtagatcatctgat
ctaaaaccaatatggtatggacttgatatgaacagaggttcacagttcgtttatggcgat
aatcaatcacccaacacagtgatcacacaaatgactttcctgcgcttactttccaaagag
gcctctcagaatatcacctatcattgcaaaaacagtataggttacatggatgaccaaact
aaaaacctaaagaaggctgtggtgctgaagggagccaatgaccatgatatccgagctgag
ggaaataaccgttttagatacactgtcatttctgacacctgctctaaacacaatgggaat
gtgggcagtacagtctttgaatacaaaacacagaatgtggcacggttacctatcattgat
attgccccagtagatgttggaggcacagaccaagaatttggaatagagattggacgagtt
tgttttgtgtaa
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