Crotalus tigris (Tiger rattlesnake): 120318304
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Entry
120318304 CDS
T08476
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120318304 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctig03041
]
120318304 (PRPF40B)
Spliceosome [BR:
ctig03041
]
Complex A
U1 snRNP components
U1 related factors
120318304 (PRPF40B)
Complex B
120318304 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Glyco_hyd_101C
DUF4936
DUF6887
Motif
Other DBs
NCBI-GeneID:
120318304
NCBI-ProteinID:
XP_039221661
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MEPPVRRSTPDSGSGPPGQPAPFPSAPPPPPILPPPFMPPPGIPPPFPPMGLPPMGPRPP
PMPPMPPSMMPPPPLIPPMPGPPPLGQMPTMVPPMLPGMIMPGVPAGPVPVSGGAAPVTD
PSNTTVTQAAPMIPNPLAGAVQQNIILGGSPVLDTGRKKPAWSEHKAPDGRIYYYNAETK
QSSWEKPDELKSKAELLLSRCPWREYRSETGKSYYYNTQSKESRWTRPRELDDIEALIKE
EEEEAEKQQLPQQLEPPLSGPASPSPSSAATSDTEGTGGVEEAPGTEGIPAAVEEVTSSC
DPLRRDEEDRGSASAWSNKEEAKQAFKELLKDKGVPASASWEQAMKLVSCDPRFSALPKL
SEKKQAFNAYKAQRDKEEKEEARLRAKEAKEELQHFLEEHSKMNSTTRYRKAEQMFGELE
VWAMVPERDRKEIYDDVLFFLAKKEKEHTKQLRKRNIQALKSILDSMSRVSFQTTWSEAQ
QYLMDNPSFAEDEDLQTQPGLLPTFPLSDMDKEDALICFEEHIRTLEREEEEERERGRLR
ERRQQRKNREAFQAFLDELHESGRLHSMSTWMELYPSLSTDRRFANMLGQPGSTPLDLFK
FYVEDLKARFHDEKKIIKDILKDRSFSVEVNTTFEDFAHVISFDKRAATLDAGNIKLTFN
SLLEKAEAREREREKEETRKMRRKEAAFKSMLRQAAPPLEPNTAWDEVRERFANNIAFEQ
ITLESERIRLFREFLQLLESECQHFHTKAKKHAKKPKKHHRKHSASGSESGSDHPHRAAK
RKKRNHSESAGSGASSSADSEHSPRRAKRQKKKSKKKRHKSNSPESEAEHKKEPSRAEEW
EREKAPLRPEGRGHSPPRGTRRERSGWDTSESEELSEGELERRRRTLLQQLGDQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggagccccccgtgcgccggtcaactccagattcaggcagtggtcctcctggacagcca
gctccctttccttctgccccaccaccaccaccaattctacctcctccatttatgcctcct
cctgggatcccaccaccatttccacccatgggattgcccccaatgggaccacggccacct
cctatgccgcctatgcctcctagcatgatgccacctccccctctgattccacctatgcct
ggaccaccacccctgggtcagatgcccacaatggtaccaccgatgctgcctgggatgatc
atgccaggggtgccagctgggcctgttcctgtttctggaggagcagctcctgttactgac
ccatccaacactacagtgacccaagcagcacctatgatccccaaccccctggcaggtgct
gtgcaacaaaatataattcttggtggctctccagtgttggatacaggccgaaagaagcca
gcatggagtgaacataaagccccggatgggcggatctattattataatgctgaaaccaaa
caatcaagttgggaaaagccagatgaactcaagtctaaggcagagctcttgctgtcacgc
tgtccttggcgtgagtatcgctcagaaactgggaaatcctattactacaacactcagagc
aaggagtcacgctggaccaggccacgagagttggatgacattgaggcattgatcaaggag
gaagaggaggaagcagagaagcaacagctacctcagcaactggagccaccgttgtcgggc
cctgccagtcccagcccgtcttctgcggccacctcagacacagaaggcactgggggcgtt
gaagaggccccagggactgagggaatcccagctgctgttgaggaagtcacaagcagttgt
gatcccctccggagagatgaagaagatcgtggcagtgccagtgcctggagcaacaaagag
gaagctaaacaagcttttaaggaactgctcaaagacaagggtgttcccgctagtgcatcc
tgggaacaggcgatgaagcttgttagctgtgacccccgtttcagtgctttgcccaagctg
agtgagaagaagcaggcattcaatgcctacaaggctcaacgggacaaggaagaaaaggaa
gaggctcgactccgggcaaaggaggcaaaggaagaactgcaacactttttggaagaacac
agcaaaatgaattctaccacccgttacaggaaagctgaacaaatgtttggtgagctggaa
gtgtgggccatggtccccgaaagggatcgcaaggagatctatgatgatgttctttttttt
ctggccaagaaagagaaggagcacaccaagcagctccgcaaaaggaacattcaagctctg
aagagtatcctggacagcatgagccgtgtcagcttccagaccacttggtccgaggcccag
cagtatctaatggacaatcccagctttgccgaagacgaagacttgcaaactcagcctggc
ctgctcccaactttccctctttcagacatggacaaggaggatgctttaatctgctttgag
gaacacatcaggacgttggagagggaggaggaggaagaacgcgaacggggtcgattacgg
gagagacgtcagcagcggaaaaacagggaagccttccaggccttcttggacgagcttcac
gaaagcgggcgccttcactccatgtccacttggatggagctgtatccctccctcagcacc
gaccgacgctttgccaacatgttgggccagcctggctccaccccgctcgatctctttaaa
ttctatgttgaagatctgaaggcccgattccatgacgaaaaaaagatcatcaaggacatt
ctcaaggaccggagcttcagtgtggaagtaaatacaacctttgaggactttgcccacgtc
atcagttttgacaagcgtgctgccacgctggatgctggcaacataaagttaactttcaac
agtctgctggaaaaggccgaggcacgggagcgtgaacgggaaaaggaggaaacccgtaag
atgaggcgcaaggaggcagccttcaagagcatgttgcgtcaggcagctcctcccctggaa
cccaacaccgcctgggatgaggtcagagagcgatttgccaacaatattgcctttgagcag
atcacactcgaatcagaacggatccgcctctttcgtgaattcctgcagttgctggagagt
gagtgccagcatttccataccaaggccaagaagcacgccaagaagccaaagaaacatcat
cgcaagcactctgcctcgggttcagaatcgggctcagatcatccccaccgagcagccaag
cgcaagaaacgaaaccactcggaatcagcgggttcaggtgcctcgtcctcagccgattca
gaacatagccccaggcgtgccaagaggcagaagaagaagagcaagaagaaacggcataag
tcgaacagccctgaaagcgaagctgagcacaagaaggagccaagccgggcagaagagtgg
gagcgagagaaggcccctctgcgacctgaggggaggggccactcccctccccggggtact
cggagggagcggagtggttgggacacctcagagagcgaggagctgagcgaaggggagctg
gaacgtcggcgtcggactctgctgcagcaactgggtgaccagtaa
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