Chlamydia trachomatis B/Jali20/OT: JALI_7531
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Entry
JALI_7531 CDS
T00960
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctj
Chlamydia trachomatis B/Jali20/OT
Pathway
ctj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JALI_7531 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctj03400
]
JALI_7531 (mfd)
Enzymes [BR:
ctj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JALI_7531 (mfd)
DNA repair and recombination proteins [BR:
ctj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JALI_7531 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_30
DUF3638
AAA_19
RecG_dom3_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAX11207
LinkDB
All DBs
Position
complement(872383..875622)
Genome browser
AA seq
1079 aa
AA seq
DB search
MDFDPTSIDFSSFPLLKDTKLPSLVENLHSGARSFVIAKLFKELKRSIVVITTLAKLDDL
FEDLTTLLAESPLEFPASEIDLSPKLVNVDAVGKRDHILYSLQKQSAPVICVTTLKALSE
RTPSPESMIRDHLELRVGEELDPDTLLDLCKSLGYRHEALAREKGDFAFRGGIVDIFPLS
SPEPFRIEFWGDRVSSIRSYNPSDQLSTGKLSQITISPATAIIPTNKLSHSLLDYFKAFP
LCIFDGLSSLEDNFSDIAGILASLPKRFMPIQDLCQRILKEFTPLFFEEKTFPNLISHKD
TGFSIEAFHKKISVQRVSLPFIYPPALIETSGEQNPLLAFLKTFQDFCAGRTLSLALYCS
NTKSLKEAHDLAAACIPNTQIYDHPTTLSSSFALVEAGFAAVSLSEFAASKVLRRQKQRN
YFSTTTEEVYIPVPGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYADKARLYVPSD
QAYLISRYVGASEKAPDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYP
PHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVK
AVCDGHKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGR
IDILIGTHKVINKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTL
YLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGGQVYVIHNRIESIF
RLGETIRTLIPEARIGVAHGQMHANELASIFYKFKTQQTNVLIATALIENGIDIPNANTI
LIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNKQEYGGGMK
IALHDLEIRGTGNILGTDQSGHISAVGFNLYCKLLKKAVAALKHKQKPMLFHDDIKIEFP
YHARIPEDYIDLASMRIEFYQKIGNAESEEELEAIEEELRDRFGPSPEAISWLFALARIR
LIAQEYHLSSIKGTGNALYIQQYHDKDKQIQKTLPYSLSPTPELLVKEVQESVEKAFPK
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacccaactagcatagatttttctagttttcctttattaaaagacacgaag
ctcccgtccttagtggaaaatctccactcgggagcaaggtcttttgtcatagcaaaacta
ttcaaagaacttaaacgctctatcgtcgttatcacgacactggcaaaacttgatgattta
ttcgaagatttgaccactctattggcagaatcgcctcttgagttccctgcttcagaaata
gatttatcccccaagctggtgaatgttgatgcggtgggaaaaagagaccatattctgtat
tctctgcaaaaacagagtgctccagttatctgtgtcacaacactgaaggctttatcagaa
agaactccttctccagaatctatgatccgagatcatctcgaacttcgagtaggagaagaa
ctggatcccgataccctactcgatctttgtaaaagtttaggttatcgacatgaagctcta
gctagggaaaaaggagactttgcattccgaggagggattgttgatattttccccctatct
tctccagaaccttttcgcattgaattctggggggatcgcgtttcctctattcgctcttac
aacccttcggatcaactctctacaggaaagctgtctcaaattaccatttctcctgcgacg
gcaatcattcctacaaacaaattatctcattcacttttggattattttaaagcgttcccg
ctttgtatctttgatgggctctcgtctcttgaagataatttttcggatattgcaggcatc
ttagcatctcttccgaaacgttttatgcccattcaggatctatgtcagcggattctcaaa
gaatttactcctctattttttgaagaaaaaacgttccccaatctcatttcgcataaggat
acaggattttctatagaggcttttcataagaagatctctgtacaaagagtttctttacct
tttatctatcctccggcactaatagaaactagtggcgagcaaaaccctttacttgcattt
ttaaagaccttccaggatttttgtgctgggcgtacgctctctttagctttgtattgttcc
aatacaaaatccttaaaagaagctcatgatctcgcagcagcctgtatcccaaacactcaa
atttacgaccatcctacaactctctcctccagttttgcgttagtagaagctggatttgct
gccgtttccctttcggaatttgcagcgagcaaagtcctccgtagacaaaaacaacggaac
tatttttctactacaacggaagaagtgtatattccagtcccaggagagactgtagtccat
ttacacaatggaattggaaaattcattggtatagagaaaaagcctaatcatctcaatatt
gaaacagattatctagttttagagtatgcagacaaagctcgcctctatgtcccttcagac
caagcttatctaatctcacgctatgttggtgcttcagaaaaagctcctgatttgcatcac
ttgaatggagcaaagtggcgacgatctcgggagctctcagaaaagtctgtgattttgtat
gcagaaaagctgattcaaatggaagctcagcgttctacagcgaattcttttatctatccc
ccgcacggagaagaggtaatcaaatttgccgaaagtttcccgtatgaagaaacgccagat
cagcttaaagctatcgatcagatttatgcagatatgatgtctgataaattaatggatcgg
ctgatttgtggagatgcagggttcgggaaaacagaaatcattatgcgggcagccgtaaaa
gctgtgtgtgatgggcacaagcaagtaatcgttatggtccctaccacgatcttagcgaac
cagcattttgaaactttttcccaacggatggctgggctgcctatcacaattggactattg
tcccgcttttctcaagggaaaacgatgaaaaaaacattagaggatatagcccaaggacgt
attgacattctcattggcactcataaagtcattaacaaagccatagaatttcataatcca
ggtctacttattattgatgaagaacaacgctttggagtgaaggccaaagattctctaaaa
gaacgcttccccacaatcgattgtcttactgtttctgcaactccaattccaagaactctg
tatctctctttatctggagctcgagacctttctctcattacaatgcctcctttagatcga
cttcccgtcagtacatttgtcatggagcattctgaagaaaccctatctgcagcaatacgc
catgagcttttacgtggagggcaggtttacgttattcacaatcgcatcgaaagtattttc
cgtttaggagaaaccattcgaacattgattccggaagcgcgtattggcgtagctcatgga
cagatgcatgccaatgaactagcaagtatattttataaatttaaaactcaacaaaccaat
gtgcttatcgcaacggctttaattgaaaatggtatcgacattcctaatgcaaatacgatc
ttgatagaccacgcagataaattcggtatggctgatttgtatcaaatgaaaggccgtgtt
ggacgatggaataagaaagcttattgttattttcttgtccctcatttggatcgcttatcc
ggacctacttctaaacgcctagaagcattgaataaacaggagtacggtggcgggatgaaa
atagctcttcatgatttggaaatccgaggaactggaaatattttaggtaccgaccaatcc
gggcatattagtgctgttgggtttaacctatattgcaaattactgaaaaaagctgtggct
gccctgaagcataaacaaaaacccatgctcttccacgatgatataaaaattgagtttcct
tatcatgcgcgcatccctgaagactatatagatcttgcttctatgcgcatcgagttctat
caaaaaattggaaatgccgaatctgaagaggagctagaggctatagaagaagagctgcgg
gataggtttggaccttctccagaagctatttcctggttatttgctctagcgcggattcgg
ttaatcgcgcaggaatatcacctttccagtatcaaaggaacagggaatgcattatatatc
cagcagtatcatgataaagacaaacaaattcaaaaaacgttaccgtattctttatcaccg
acaccggaacttttagtaaaggaagtccaagagtctgtagaaaaggctttcccaaaataa
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