Chlamydia trachomatis L2b/UCH-1/proctitis: CTLon_0562
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Entry
CTLon_0562 CDS
T00646
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta-prime chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ctl
Chlamydia trachomatis L2b/UCH-1/proctitis
Pathway
ctl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ctl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTLon_0562 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctl03021
]
CTLon_0562 (rpoC)
03400 DNA repair and recombination proteins [BR:
ctl03400
]
CTLon_0562 (rpoC)
Enzymes [BR:
ctl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTLon_0562 (rpoC)
Transcription machinery [BR:
ctl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTLon_0562 (rpoC)
DNA repair and recombination proteins [BR:
ctl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTLon_0562 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAP06960
UniProt:
B0BBU5
LinkDB
All DBs
Position
complement(668989..673179)
Genome browser
AA seq
1396 aa
AA seq
DB search
MFREGSRDDAALVKEGLFDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERVIYYEEYVVIDPGNTDLVKKQLLNDAKYREVVEKWGKDAFV
AKMGGEAVYDLLKSEDLESLLGELKDRLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWM
VLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKAFKDEVEV
LRALNAGGFILKDEICGSRRDETGRGIHIHEKIKVRIDGQIIETTPGRVFFNTIVPKELG
FQNYSMPSKRISELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIK
KEILKDAYDKVAIVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSKHN
PLFLMVDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGAR
KGLADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVY
GRTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESRRGVCAKCY
GLNLANGHLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGVAATSSTPEIVAECDGILVY
LDLRVVVDQEGNNLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFPVELGAKILV
NDGAAVTAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVANKNTGLVELIVKQHR
GELHPQIAIYADANMKELVGTYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGG
LPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLI
VQRGDSVIKGQQLTDGLVVPHEILAICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIV
RQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTE
SFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQ
EDLVFDFDSEFESVAG
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgttcagagaaggttctcgagacgatgcagccctggtaaaagaagggctgtttgataag
ttagaaattgggattgcttcagatgtgactattcgcgacaagtggtcttgtggcgaaatt
aagaaaccggagacgatcaactaccgtacatttaaacctgaaaaaggcggtttattctgc
gaaaagatttttgggcctactaaggactgggaatgttattgcggtaaatataagaagatc
aaacataaaggaattgtatgtgaccgctgtggagtagaggtcacactttctaaagtgcga
cgagaaagaatggctcatattgagttagctgttcctattgttcacatatggttcttcaaa
acaactccttcaagaatcggaaatgttttaggaatgaccgcttcggacttggagcgtgta
atttattacgaagaatatgttgttatcgatccaggtaatactgatctcgtgaagaaacaa
cttctcaatgatgcgaaatatcgagaagttgttgaaaaatggggtaaagatgctttcgtt
gccaaaatgggaggagaggctgtttatgatcttctcaaatctgaagatttggaaagcctt
ttaggagagcttaaagatcgtttaagaaaaacgaaatctcagcaagcgagaatgaagctt
gctaaacgtctgaagatcgtagaaggttttgtatcttcttcgaaccgtcctgaatggatg
gtattgaagaacatccctgttgttcccccagatttacgtcctttagttcctttagatggt
gggcgttttgctacttcagacttaaatgatctgtatcgtagggttattaaccggaataat
cgcttaaaagctattttacggctaaaaactcctgaggtcattgtccgcaatgagaagcgg
atgttgcaggaagctgttgacgctctgtttgacaatggacgtcacggacatcctgttatg
ggagctggcaatagacctctgaagtctttgtcagagatgttgaaagggaaaaacgggcgt
ttccgacaaaatttgttaggtaaacgagtggattactccggacgttcagtgattattgtt
ggtcctgaattgaaatttaatcagtgcggtttgcctaaggaaatggcgctggaattgttt
gagccatttattatcaaacgattgaaagatcagggtagtgtttatactattcgttcagcg
aagaagatgattcagcggggagctcctgaagtttgggatgttcttgaagaaataattaaa
gggcatccagttttactaaaccgagcgcctactttgcaccgattaggaatacaggctttt
gagccagtattgattgaagggaaggctattcgggtccatcctctggtatgtgcagcattc
aacgccgactttgatggagaccaaatggctgttcacgtgccgctctctatcgaggcgcag
ttagaagctaaggtcttgatgatggctccagacaacattttcttgccatcttctgggaaa
cctgttgcaactccttctaaggatatgacattgggtatctattatttaatggctgatcca
acctacttccctgaagaacatggagggaaaacaaaagcatttaaagacgaagtagaagtg
cttcgagctctgaatgctggagggtttattctgaaggatgagatctgtggttctcgtcga
gatgaaactggacgagggattcacatccatgagaaaattaaagttcgaatagatggtcag
attattgaaacaacacctggtcgtgtatttttcaatacgatcgttcctaaagaacttggt
ttccaaaactatagcatgccaagtaagcgtatcagtgaattgattctgcagtgctataag
aaagttgggttagaagctactgtacgcttcctagacgatcttaaagaattaggctttgta
caatctacgaaagctgcgatttctatgggtctgaaggatgttaagattcctgaaatcaag
aaagaaatcttaaaagatgcttacgacaaggttgctattgttaagaaacagtacgaggac
ggaattattactgatggggaacggcattccaaaacgatcagtatttggactgaagtctca
gacctcttgtctaatgctttgtactctgagatcaagaaacaaacaaatagcaaacataat
ccgctattcttgatggttgattctggagctcgaggaaataaatctcagttaaaacagtta
ggtgctttacggggactaatggctaaaccaaacggagccattattgaatctccgattact
tcgaacttccgagaaggtttaactgttctagagtactctatttcttctcacggagctaga
aagggattggcagataccgcgcttaaaacagcggattccgggtatttgactcgtcgttta
gtagacgtcgctcaggatgtcattattactgagagagattgtggtactttaaatcatatc
gaggtgtcgacaatccgtcagggttctgaagaactgttgcctctaaaagatcgtgtttac
ggacgtacggtttccgaaaacatttatcagcctggtgataagagcaacgtcttagcatat
gctggcgatgtattaacttctgctcaagctgaagctattgatgacgctggtattgaaagt
gtgaagattcgttccactcttacttgtgaaagtcgtcgaggagtatgtgctaaatgctac
ggtttgaatctcgctaacggtcatttgattggattaggagaagccgttggtattatcgca
gctcaatccattggggaacctggaactcagttaacaatgagaacgttccaccttgggggg
gttgctgcgacatcctcaactccagagatcgttgctgagtgcgatgggattcttgtttac
ctagacttgcgtgttgtcgtagaccaagagggtaataatcttgtgcttaacaagatggga
gctcttcacttagttcaagacgaaggacgaagcttaagtgaatataagaaactcttgagt
acgaagtctattgaaagtctggcaacattccctgtggaattaggagctaagattttagtt
aatgatggtgctgctgttacagcgggacagagaattgctgaggtagagcttcataacatc
ccaattatctgtgataagccaggattcgttcattacgaagatttggtagagggagtctcc
acagagaaggtcgcgaataagaatactgggcttgttgagttaatcgtaaaacagcacaga
ggggaattacatcctcagatcgctatatatgctgatgccaatatgaaagagttggtcggt
acgtatgctattccttctggagcaattatctccgtagaagaaggtcaacgtatcgctcca
ggaatgctcttagcgagattgcctcgaggggctatcaagactaaagatattactggaggt
ttgccaagggttgccgagttagtagaagctcgtaagcctgaagatgctgctgatatcgct
aagattgatggggttgttgacttcaaaggcattcagaagaacaagcgtattcttgttgtc
cgagatgagattacgggaatggaagaggaacatttgatttctctaaccaaacacttaatc
gtacaacgaggcgatagcgtaatcaaaggtcagcagttgacggatggtttagttgttcca
catgagatccttgcgatttgtggtgttagagagcttcagaaatatttagttaatgaagtt
caagaagtataccgcctacaaggggtagacattaacgacaaacacatcgaaattattgtt
cgtcagatgttgcagaaagttcgcattactgatccaggtgatacgacgttattgtttgga
gaagatgtcgataagaaagagttctatgaagagaaccgtcgcacggaagaagatggaggg
aaacctgctcaagctgttccagtgctgttgggaatcactaaagcttctttgggaactgag
tcctttatttctgctgcttcgttccaagatacgactcgggtcttaacagacgctgcttgc
agcagtaagacagactatctgttaggattcaaagagaatgtgatcatgggacatatgatt
cctggaggtacaggatttgatacgcacaagcgtattaagcaatatcttgaaaaagagcaa
gaagacttggtctttgattttgacagcgagtttgagtctgtggcaggttaa
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integrated database retrieval system
