Chlamydia trachomatis L2b/8200/07: L2B8200_00343
Help
Entry
L2B8200_00343 CDS
T02573
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ctlq
Chlamydia trachomatis L2b/8200/07
Pathway
ctlq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctlq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L2B8200_00343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctlq03400
]
L2B8200_00343
DNA repair and recombination proteins [BR:
ctlq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L2B8200_00343
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
L2B8200_00343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
AAA_29
UvrA_inter
UvrA_DNA-bind
AAA_16
RsgA_GTPase
nSTAND1
AAA_23
DnaJ_CXXCXGXG
Anti-TRAP
Viral_helicase1
AAA_33
cobW
NACHT
AAA_21
AAA_18
Motif
Other DBs
NCBI-ProteinID:
CCP51620
LinkDB
All DBs
Position
372627..377987
Genome browser
AA seq
1786 aa
AA seq
DB search
MSSIVRLSGITVRNLKNITVEFCPREIVLFTGVSGSGKSSLAFNTIYAAGRKRYLATLPS
FFATKLDSLPDPSVKKIEGLSPTVAVKQNFFEQHVHATVGSTTEINSYLALLFSLEGQAY
DPVTLHPLTLYSKEKILSEIAAIPDGTQLTLLAPLPARDVLTVRECLRQGFTKVLIDEEV
VPIHKFLTTGIPVPGQLIVDTLIKNTSNTPRLKVSLFTTLDIGHGECSLHFDNQKRVFST
QATLPETQQTYAPLSPDLFSSHSHKDRCPQCQGSGIFISIDDPCIIQQTLSIEDNCCPFA
GNCSTFLYRTIYQSLADSLGFSISTPWQNLSPEIQHIFLYGKEGLSIPVKLFDGTLGKKT
QTHKQWKGVLNEIGEKIRFSNKPARYLPKGTSYTVCPRCNKTGLSDYANATRWHGKSFAD
FQQMSLQELFIFLNQLPKKELAIEEVIQGFKSRLAILIDLGLPYLSPERAIDTLSGGERE
RTALAKHLGAELIGVMYILDEPSIGLHPQDTHKLMNVIRRLRDQGNTVLLVEHDEQMISL
ADRVIDIGPGAGIFGGEVVFNGSPREFLAKSDSLTAQYLRQEQHISVPAKRTNSLGTITL
SKANKHNLKDLTVSIPLGQMTVVTGVSGSGKSSLINDTLVPCVEEFIEQGFCSTLSIQGA
LSRLVHINRDLPGRSQRSIPLTYIKAFDEVRQLFAEQPRCKTLGLTKSHFSFNTPLGACA
ECGGLGSITTTDNRDSITCPSCLGKRFLPQVLEVRYKNKTIADILEMTAYEAKNFFLDEP
SIHQKIETLCTLGLQYLPLGRPLYSLSGGEIQRLKLAYELLAPVKHPTLYVLDEPTTGLH
THDVKQLIYVVQSLIHQGHSVIIIEHNMHVVKVADYILELGPEGGNKGGYLIASCSPEEL
IHKHTPTAIALRPFLSSPQELPYLPDPSPKPPVPAAITIANAHQYNLKHIDLSIPRYALT
AVTGPSASGKHSLVFDILHAAGNIAYAELFPPYIRQALIKKTPLPAVDKVTGLSPVIAIE
KTSASRNSNHSVASALEISEMLESLFTRIGHPYSPISGDALRTISPETIAEELLTHYTKG
YVTITVPFPKEEEFFSYTQEMLQEGFLKLYANEQFYDLDGPFPTSLENPALVIHHVKILE
KNLPSLLASLTLAFSKASSVCLHIEYAGTSLSKTYRQGLQDASGNLFPNIETPSILNHES
YLCPLCHGKGFLSTCSILPHKKRFAQHTPISLFTSLFPNQDPSPIYPLLNELGIPSIALF
QEIDVLSFESLCLGTQQHLGLNALCTKAMLMESEEDFPPDLISKTPCNQCQGLGVYTYKH
CIRIHSISLSEIYQSNVAFLKKLLLSVEEEPSLVQDILSRLDLLDRVGLGYVILGQEQQS
LSDGEHYRLLLAKAFSSGLTDVIYLLEDPLAGIHPEDAPCLLAVIKKLVTNHNTVIVTDR
EGSLAEHADYLLHLGPEPGPNGGYLLSTSALKQSQPVLCNTRSSEETPQLSVSVSTSTIQ
IENLAFPLQRLSTISGVSGSGKTTLLNSIYEHGCAILEKDPSVFSEIIFLDSYPQIASSR
SDISTYFDIAPSLRNFYASLTQAKALNISVSMFSPNTKQGQCSDCWGLGYQWIDRAFYAM
EKRPCPTCGGFRVQPLIQEVVYEGKHFGQLLQASLNEVAETFSFLKKIQKPLHTLITNGL
GYLSLGQNMASLSLSEKIAIKLTKHLFLPPKHPTLFLLDEIATSLDNQQQSALLVQLNTL
VSLGHTVVIIENHPTFSQQADFWIQMGRKTDNHILFAGPNPNLSFT
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctatcgttagactttctggtattactgtaaggaatttaaaaaacattacagta
gagttttgtcctcgagagatcgttttgttcaccggggtttctggatccggaaagtcttct
cttgctttcaatactatttatgccgcaggaagaaaacgctaccttgctaccctcccctct
ttctttgcaacaaagctagactccttaccagatccctccgtaaaaaagatagaaggattg
tctccaaccgtagccgttaagcaaaactttttcgaacaacacgtacatgcgacagtcggt
agtacaaccgaaattaactcgtatttagccctacttttctccttagagggccaagcctat
gatccggttacactacaccctctaactctatacagtaaggaaaaaatcctttctgaaata
gctgccattccagatggaactcaactgactttgctcgctcctcttcccgccagggatgtt
cttaccgttcgagaatgtctccgtcaagggtttaccaaagtcctcattgatgaagaggtt
gttcctattcataagtttcttacaacaggcattcctgttcccggtcaactcattgtcgat
acgttgatcaaaaatacctctaacactccgcggttaaaagtcagcttatttacaacctta
gacatcggtcatggtgaatgctccttacacttcgataatcagaaacgagtcttttccaca
caggcgactcttccagaaacacaacaaacctatgcgccgctatccccagatcttttttcg
tcgcacagtcacaaagatcgttgtccacaatgccaaggttcaggaatctttatatccatc
gatgatccctgtatcatccagcaaacgctctccatcgaagacaactgctgtccttttgca
gggaattgctccaccttcttatatagaaccatctatcaatctctagctgatagcctagga
tttagtatcagcactccgtggcaaaatctttctcctgaaatccaacatatttttttatat
gggaaagaaggtctctctatcccagtaaagctgtttgatggaactttaggtaagaaaacc
cagacacataagcaatggaaaggtgtgctcaatgaaattggagaaaaaattcgattttca
aataagcctgctcgctaccttcctaaagggacttcctatacagtatgccccagatgtaac
aagactggactcagcgactatgctaatgctacccgatggcatgggaaaagctttgcagac
tttcaacaaatgtctcttcaagagttatttattttcctgaatcaacttcctaagaaagag
ctcgctattgaggaagtaatccaaggattcaaatcgcgacttgctattctgatagatctt
ggtcttccctacctttctccagaaagagctattgatactctttccgggggagaacgggaa
cgtacggccttagctaagcatctaggtgccgaactcatcggagtcatgtatatcctggat
gagccttctattgggctacatcctcaggatacccataagcttatgaatgttattcgaaga
ctccgtgatcagggaaacactgtcttactcgttgaacatgatgagcagatgatttctctc
gcagaccgggtcattgatatcggcccaggagctggtatttttggtggcgaagttgtcttc
aatggatctcctagagaatttctggcaaagagtgactctttgaccgcacaatatctccgt
caagagcaacatatttcggtccctgctaaacgtacaaactccttagggacaattacctta
tctaaagccaataagcataatcttaaggacctgacagtttcaattccattaggacaaatg
actgtcgtcaccggagtctctggttctgggaaatcttctcttatcaacgatacactagtc
ccttgtgtggaagagtttattgaacagggattctgttccactctatctattcaaggagcc
ctctctcgccttgtccatattaatagagatcttccaggacgctcacaacgatctatccct
ttgacctatatcaaagcttttgacgaggttcgtcagttattcgcagaacaacctcgctgt
aaaaccttaggactcactaaaagccactttagcttcaacacgcctctaggagcctgtgca
gaatgtggaggcctaggatctataacaacgactgataaccgcgattccataacctgtcct
tcctgtttagggaaacgattcctccctcaagtattagaagtccgctataaaaataaaacg
attgccgacattcttgaaatgacggcctatgaagctaaaaacttctttttagatgagcct
agtattcatcaaaaaatcgaaaccttatgcactctgggactacaataccttcctctagga
agacctctctatagcttatctggaggagaaatccagagactcaagcttgcatatgagtta
ttggctccagttaaacaccctactctctatgttcttgatgaacccacaacaggcctccac
acccacgatgtcaaacaacttatttatgttgtgcaatcccttattcatcaagggcactcg
gtgatcatcatcgagcataacatgcatgtggtgaaagttgcagactatatactggaactt
ggtcctgaaggaggaaataaaggcggttatctcatagcttcttgctctccagaagagcta
atccataaacatactccaacagctatagctctccgtcctttcctatcttctcctcaagaa
ctcccttatctacctgatccgagtcccaaacctcctgtacccgccgccattactattgca
aacgctcaccagtataatttaaaacatatcgatctctccatacctcgatatgcgcttact
gctgtgacaggtccatccgcttccgggaaacattcccttgtatttgatattctgcatgca
gcaggaaacatcgcttacgcagagctattccctccctatatccgacaagctctcataaaa
aaaactcctcttcctgctgttgataaagtaacaggactatcccctgttatcgcgatagaa
aaaacgagcgcctcgagaaattccaatcattctgtggcttctgcattagaaatctcagaa
atgctagaaagccttttcacacgaatcggccatccttattctccgatttctggtgatgca
ctaagaactatttctcctgaaacgattgctgaagaattgctcacgcattacacgaaaggc
tatgtaacgattactgttcctttccctaaagaggaagagtttttctcttatacgcaagag
atgcttcaggaagggtttttaaaactttatgctaatgaacagttctatgatttagatggg
cctttccctacttctttagagaacccagctctagtcatccaccatgtcaaaattttagaa
aaaaatctgccttctcttttggcttctcttactttagcctttagtaaagcttcttctgtc
tgtctgcatatcgaatatgctggaacaagcttatctaaaacataccgccaaggattacaa
gatgcttctgggaacctattccctaatatagaaacaccctctatcttgaaccatgagagc
tacttatgccctctctgtcatggaaaaggcttcctatccacttgttctattcttcctcat
aagaaacgtttcgcacagcataccccaatttccttattcacaagcctatttcctaaccag
gatccttcaccgatctatcctcttctgaatgaactagggatcccttccattgctctattc
caagaaatagatgttctttcttttgaatctctttgcctaggaacacaacaacatctggga
ttgaatgctctttgcacaaaagcaatgttaatggaatccgaagaagatttccctcccgac
cttatctccaaaactccgtgtaaccaatgtcagggtcttggcgtatacacctacaagcat
tgcatccgtattcacagcatttccctatcagaaatttaccaatccaatgtcgcttttctt
aaaaagctcttactttctgtagaagaggaaccctctcttgttcaagatatccttagtaga
ttggaccttctagatcgagttgggttaggctatgttatcctcggacaagaacaacagtct
ttgagtgacggagagcattataggcttctattggcaaaagctttttcatcaggtctcact
gatgttatctatcttttagaagatcccttagcagggattcacccggaagatgctccttgt
ttgcttgctgttattaaaaaactcgtgaccaaccataatacagtaatagtgacggataga
gaaggctctcttgcggaacatgctgattacctgcttcacctgggtcctgaacctggtcct
aacggaggctatctcttatcaaccagcgctcttaaacaatctcaaccggtactttgcaac
acacgctcttccgaagaaacaccacaactttctgtctcagtatccacttctacgatccaa
attgagaaccttgctttccctttacaacgactctcgactatttctggtgtatcaggatct
ggcaaaacaaccttactaaatagcatttacgaacatggctgcgctattcttgaaaaggat
ccttctgtattctcagaaattatttttctagattcctatccccaaattgcatcttctcga
tccgatatcagcacttattttgatatcgctccttcattaagaaatttctacgcttctctg
actcaagcaaaagctttaaacatctcagtttctatgtttagtccaaataccaaacaaggg
caatgttcggattgttggggactaggatatcaatggatagatcgagccttttatgctatg
gaaaaacgtccttgtccaacatgtggaggattccgtgtacaaccactcatacaagaagtt
gtgtatgaagggaaacatttcggccagttattacaagcctctttaaatgaagtagctgaa
actttttctttcttaaaaaaaatccagaaacctttacacaccttaattacaaatggtctt
ggctacttatcattgggacaaaatatggcctctctgtctctaagtgaaaaaattgccata
aaattaactaaacatctattccttcctcctaaacatcctactttattcttactagatgag
atagctacctctcttgacaatcaacaacaatccgctctgctcgtccaactcaacaccttg
gtgtctttaggacatacagtagtgatcatagaaaaccaccccaccttctctcagcaagct
gatttttggatacaaatgggacgtaaaacagataatcacattctctttgcaggacctaat
cccaatctatctttcacttaa
DBGET
integrated database retrieval system
