Chloracidobacterium thermophilum: Cabther_A2251
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Entry
Cabther_A2251 CDS
T01629
Name
(GenBank) RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
ctm
Chloracidobacterium thermophilum
Pathway
ctm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ctm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Cabther_A2251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctm03021
]
Cabther_A2251
Transcription machinery [BR:
ctm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cabther_A2251
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RHG29_45_N
CSN5_C
Motif
Other DBs
NCBI-ProteinID:
AEP12986
UniProt:
G2LF58
LinkDB
All DBs
Position
1:complement(2660320..2661996)
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AA seq
558 aa
AA seq
DB search
MRLDLKENLMDSDTDPTAEGALPALDLEKFLAEIDSTASEEDDFILDSEAEDTEELEEAI
EDAESGVTPPPDLSASESDRSLDAMTLYLREMSNVALLTREDEVNIAKRIERGRRRLYKA
HSRSLIVAEQLEEIAEQLKERKIGIRQVIDTSDSDAEDITLENEERYLIETIERFQTISR
MLAHIREEAAKIEKERKRAPRKAQQRYRKYLRKRVELSRLIRSVLFSDQIRQKFNDRIRA
VVRQIQDAERKIENAQAALKDKQRRARIDEAETRAQIEQAQKVIADIEKRYLEPASRIKG
SLREIFSSTEEAEKARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAVEK
FDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMVETINKIVRTARLMVQELGREP
THEELAQRTDLPVVKVRQALKIAQEPISLETPIGDDGESNLGSFIEDRNSLNPAEMIVGK
GLREATLEVLSTLTQREAQILKMRFGLDGDGQERTLEEVGRHFSVTRERIRQIEAKALRK
LRHPSRSRKLKTFFDDGQ
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgactcgacctcaaagaaaatctgatggacagcgacactgacccgacagcggaaggc
gcccttccggctctcgacctcgaaaagtttctggccgagatagattccacggcgtccgaa
gaggacgacttcatcctggacagcgaagcggaagacacggaagaactcgaagaagccatt
gaagatgctgaaagcggcgtgacgccgccgcccgacctgtcagcttccgaaagcgaccgc
tcgctcgatgcgatgacgttgtacctgcgcgagatgagcaatgttgccctgctgacccgc
gaggacgaagtcaacattgccaagcggatcgagcgcggccgccggcggctctacaaggct
cactcgcggtcactcatcgttgccgagcagttggaagagatcgccgagcaacttaaagaa
cgcaaaatcggcatccggcaggtcattgacacctcggactcggatgccgaggacatcacg
ctggaaaatgaagaacgttacctgatcgaaaccatcgagcggttccagaccatttcacgc
atgctggcgcacatccgcgaagaagccgccaaaattgagaaggagcgcaagcgcgcgccg
cgcaaagcccagcagcgctaccggaaatatctccgcaagcgggttgagctgtcgcggctc
atccgcagcgtgcttttttccgaccagatacggcagaagtttaacgaccgtatccgggct
gtggtgcggcagattcaggatgccgagcgcaagattgaaaacgcccaggcggcgctgaaa
gacaagcagcggcgcgcacgcattgatgaagcggaaacacgtgcccagattgagcaggcg
caaaaggtcattgcagacatcgagaagcgctacctcgaaccagccagccgcatcaaaggt
tcactgcgggaaattttctcttcgactgaggaagccgaaaaagcccggcgcgagatgatc
gaagccaacctgcggctcgtcgtctcgattgccaaaaactacatcaaccgctcgcggggc
ttgcagttttccgacctcattcaggaaggcaacattgggctgatgcgtgcggtggagaag
tttgactatcggcggggttacaagttctcgacctatgccacgtggtggattcgccaggcg
gtgacccgcgccattgccgaccagggccggacgattcgtgttccggtgcacatggttgaa
accatcaacaagattgttcgtacggcgcggctgatggttcaggagctgggccgtgaaccc
acgcacgaagagctggcccagcgcacggatttgccggttgtcaaggttcggcaggcactc
aagattgcccaggaacctatcagcttggaaacgcccatcggcgatgacggcgaatccaac
ctgggcagcttcatcgaagaccgcaacagtctcaatccggcggaaatgatcgtcggcaag
ggcctgcgggaagccacgctggaggtgctcagcacgctcacccaacgcgaggcacaaatc
ctcaagatgcgtttcgggctggatggagacggtcaggaacgcaccctggaggaagtcggg
cggcacttttctgtcacccgtgagcgtatccgccagatcgaagccaaagccctgcgcaag
ctccgccatccgtcgcggagccggaaactcaagaccttctttgatgatggtcagtaa
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