KEGG   Candida tropicalis: CTRG_00390
Entry
CTRG_00390        CDS       T01115                                 
Name
(RefSeq) hypothetical protein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ctp  Candida tropicalis
Pathway
ctp03018  RNA degradation
ctp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTRG_00390
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTRG_00390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctp03019]
    CTRG_00390
   03041 Spliceosome [BR:ctp03041]
    CTRG_00390
Messenger RNA biogenesis [BR:ctp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CTRG_00390
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CTRG_00390
Spliceosome [BR:ctp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CTRG_00390
 Complex C
  U2 snRNP components
    CTRG_00390
SSDB
Motif
Pfam: LSM ECD SM-ATX Hfq Gemin7
Other DBs
NCBI-GeneID: 8301474
NCBI-ProteinID: XP_002545609
UniProt: C5M2V1
LinkDB
Position
Unknown
AA seq 96 aa
MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQFLNLKLDNITCTNSEQYPYLDAVKNL
FIRGSTVRYVHMNPNSVDCTLLQDASRREAMVQASK
NT seq 291 nt   +upstreamnt  +downstreamnt
atgttgtttttcagtttcttcaaaacattggtagatcaagaagttacagtggagttaaag
aatgatatggaaataaaaggaactttaaaatcggtggatcaatttttaaacttgaaatta
gataatataacatgtacgaatagtgaacaatatccttatttagatgccgtgaaaaattta
ttcataagaggttccactgtgcgttatgttcatatgaatccaaatagtgtggattgcacc
ttattacaggatgcatcaagaagagaggctatggttcaagcaagcaaatga

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