Candida tropicalis: CTRG_00390
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Entry
CTRG_00390 CDS
T01115
Name
(RefSeq) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ctp
Candida tropicalis
Pathway
ctp03018
RNA degradation
ctp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTRG_00390
09123 Folding, sorting and degradation
03018 RNA degradation
CTRG_00390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_00390
03041 Spliceosome [BR:
ctp03041
]
CTRG_00390
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CTRG_00390
mRNA degradation factors
5'-3' decay
Lsm complex
CTRG_00390
Spliceosome [BR:
ctp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CTRG_00390
Complex C
U2 snRNP components
CTRG_00390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
ECD
SM-ATX
Hfq
Gemin7
Motif
Other DBs
NCBI-GeneID:
8301474
NCBI-ProteinID:
XP_002545609
UniProt:
C5M2V1
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQFLNLKLDNITCTNSEQYPYLDAVKNL
FIRGSTVRYVHMNPNSVDCTLLQDASRREAMVQASK
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttcagtttcttcaaaacattggtagatcaagaagttacagtggagttaaag
aatgatatggaaataaaaggaactttaaaatcggtggatcaatttttaaacttgaaatta
gataatataacatgtacgaatagtgaacaatatccttatttagatgccgtgaaaaattta
ttcataagaggttccactgtgcgttatgttcatatgaatccaaatagtgtggattgcacc
ttattacaggatgcatcaagaagagaggctatggttcaagcaagcaaatga
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