Candida tropicalis: CTRG_00839
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Entry
CTRG_00839 CDS
T01115
Name
(RefSeq) conserved hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ctp
Candida tropicalis
Pathway
ctp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTRG_00839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctp03041
]
CTRG_00839
Enzymes [BR:
ctp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTRG_00839
Spliceosome [BR:
ctp03041
]
Complex C
Other components
Step II factors
CTRG_00839
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
AAA_22
Flavi_DEAD
AAA_19
nSTAND_NTPase5
SLFN-g3_helicase
ATPase
nSTAND3
SRP54
PhoH
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
8298231
NCBI-ProteinID:
XP_002546058
UniProt:
C5M450
LinkDB
All DBs
Position
Unknown
AA seq
593 aa
AA seq
DB search
MGERKEISELLILIDYQQLMITMMMDELTNKVSSYLNKPLNESLTKSIISQYQNCSTPDL
FVSFLNVIGIKQNDQVNEIIKCIKKINITSGSSKIDKPPIKNTRDLLDDLDDELEEIEDS
KPKMKMRKIFKKSDNDDDELDDLLNEESKPIMKFKNPPKFKKIKREDALRIKQETPIPTP
SQTPTTMIKPKTSTTNIPSSLPSPASTLQDEDENYTFDINIPTNLEVDREWYNIDEESSL
AKTDEILENSYKPRHRRKQHLQQQPRKSQTISTGGGFNEYGEYIDYDHSSENELNKIPII
SNVLIPPFLENQKQYLSLQISGNTINGKIGPTVDPIKDHTSELANMAKQGSLVVQNRRSK
QERALQAKESIGVETKEEEEEKEDQGVDEDEEKGEEVDIVQQRRSLPAFAVRDELLTTIR
DNQVTIVIGETGSGKTTQLTQFLYEDGFGKSLDKHGEKKIIACTQPRRVAAMSVAKRVSE
EMNCKLGEEVGYSIRFEDNTDSNKTIIKYMTEGILLREILGDPNLSNYSCIIMDEAHERS
LNTDILLGLFKQLLIKRRDLKLIVTSATMNANRFTRFFGFCSSIYNSRKNFPS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgggagagagaaaagaaatatctgaattgttaattttgattgattatcaacaattgatg
atcacgatgatgatggatgaattgaccaataaagtgtcaagttatttgaacaaaccatta
aatgagtcattgaccaagtctataatatcacaatatcagaattgttcaactcctgatttg
tttgtttcgtttttgaatgtaattggaatcaaacaaaatgatcaagttaatgaaatcata
aaatgtatcaagaagataaatattacatcaggtagtagcaaaatagataaaccacctatc
aagaatactcgcgatttattggacgacttagatgacgaactagaagagattgaagattcc
aaaccaaagatgaaaatgaggaagatctttaagaagagtgataatgatgatgatgaatta
gatgatctactaaatgaagaatcaaaaccaattatgaaattcaaaaatcctcctaaattt
aagaaaataaaacgtgaagatgcattaagaatcaaacaagaaactcccatccccactcct
tctcagactcccacaacgatgataaagccaaagacatccactactaatatcccatcatcg
ttaccatctccagcatcaactcttcaagatgaagatgagaattacacttttgatattaat
attcctacaaatttagaagtggatcgagaatggtataacatagatgaagaatcgtcgtta
gcaaaaacagatgaaattcttgaaaattcatataaaccacgacatcgtcgaaaacaacat
ttacaacaacaaccacggaaatctcaaacgatatcaactggaggtggatttaatgaatat
ggtgaatatattgattatgatcattcatcagaaaatgaactaaacaaaattcctataatt
agtaatgttttaattcctccatttctagaaaatcagaaacaatatttaagtttacaaatt
tctggtaatactattaatgggaaaattggacctactgttgatcctataaaagatcatact
tctgaattagcaaatatggcaaaacaaggttcgttggttgttcaaaatagacgttcaaaa
caagaacgtgcattacaagctaaagaatcaataggtgttgaaactaaagaggaggaagaa
gaaaaagaggatcaaggagtggatgaggatgaggagaagggggaagaggttgatattgtt
caacaaagaagatcattacctgcatttgccgttcgtgatgaattgttaactaccattaga
gataatcaagtcactatagtgattggtgaaacaggttcaggtaaaactacacaattgact
caatttttatatgaagatggatttgggaaaagtttagataaacatggagaaaagaaaatt
atagcatgtacacaaccaagaagagtagctgctatgtcagtggctaaaagagtaagtgaa
gaaatgaattgtaaattaggtgaagaagttgggtattcaattagatttgaagataatact
gattcaaataaaacaattattaaatatatgactgaaggtatattattaagagaaatatta
ggtgatccaaatttatcaaattatagttgtattataatggatgaagcacatgaaagatca
ttaaatactgatatcttgttaggactatttaaacaactattaatcaaaaggagagatttg
aaattaattgttactagtgcaacgatgaatgctaatagatttactagattttttgggttc
tgctcctcaatttacaattccaggaagaactttcccagttga
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