KEGG   Candida tropicalis: CTRG_02124
Entry
CTRG_02124        CDS       T01115                                 
Name
(RefSeq) protein SOF1
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
ctp  Candida tropicalis
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ctp03009]
    CTRG_02124
   04121 Ubiquitin system [BR:ctp04121]
    CTRG_02124
Ribosome biogenesis [BR:ctp03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    CTRG_02124
Ubiquitin system [BR:ctp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     CTRG_02124
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Sof1 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 Beta-prop_SCAP MIOS_WD40
Other DBs
NCBI-GeneID: 8298519
NCBI-ProteinID: XP_002547827
UniProt: C5M9G2
LinkDB
Position
Unknown
AA seq 434 aa
MKIKTISRSSDTYVPVKNTQESALPRNLNPALHPFERAREYTRALQATKLERIFAQPFVG
QLGDGHRDGVYGLSKNYNTTNQVASSSGDGIIKYWNLTDRLETASFKAHYGMVSGICIHN
NQMFSCGDDKTVKVWSVNTDDFDHKINDDEVYTNKGSRTTGGGSKTSGGLIKTFIGEHSF
KGIDHHREDDLFVTGGAAIQLWDINRSKYISNLSWGCDNINTVKFNQSETNIIASTGSDN
SIVLYDIRTNTPVHKAVTSLRNNALCFNPMEPFNFASACDDTNAYSWDMRKMEKPKKTYK
GHVAPVMSVDYSPTGQELVTGSWDKTIRIFPALNGRSRDVYHTKRMQRVSAVMFTTDSKY
ILSGSEDTSIRVWRARSDQRSAVKSARERAKLEYDDKLKERYQYMPEIRRIANHRHLPKV
VKKAEEIRRNSSKK
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgaagataaaaacgattagtagatcatcagatacatatgttccagttaagaacactcaa
gaatcagctcttccacgtaacttaaacccagcattacatccatttgaacgtgcaagagaa
tatactagagcattacaagcaactaaacttgaacgtatatttgctcaaccatttgttggt
caattaggtgatggacatcgtgatggagtttatggattatctaagaattataatactact
aatcaagtagcaagtagttcaggtgatggtataatcaaatattggaatttaactgatcgt
ttagaaaccgctagttttaaagcccattatggtatggttagtgggatttgtatacataat
aatcaaatgtttagttgtggtgatgataaaaccgttaaagtttggtcagtgaacaccgat
gattttgaccacaagatcaacgatgatgaagtttacactaataaaggatctcgaacaact
ggtggtggtagtaagacaagtggtgggttgattaaaacatttattggtgaacattcattc
aaaggcattgatcatcatcgtgaggatgatttatttgtcactggtggtgcagctatccaa
ttatgggatattaaccgttctaaatatatctccaatttaagttggggatgtgataatatc
aatactgttaaattcaatcaaagtgaaactaatataatagcaagtacaggttcggataat
tccattgtattatatgatatcagaacaaacacaccagttcataaagccgtgacaagttta
agaaacaatgccttgtgtttcaaccctatggaacctttcaactttgcatctgcttgtgat
gatactaatgcttatagttgggatatgagaaagatggaaaaaccaaagaaaacatacaag
gggcatgttgcaccggttatgtcagtggattattccccaacaggtcaagaattagtcaca
ggaagttgggataaaactattagaattttcccggcattgaatggaagatctcgtgatgtt
tatcataccaagagaatgcaaagagtatcagctgtgatgtttacaactgatagtaagtac
atattgtctggttccgaagatacaagtatacgtgtgtggagagctagatcagatcaaaga
agtgcagttaaatcagctagagaaagagctaagttggaatatgatgataaattgaaagaa
agatatcaatacatgcctgaaattagaagaattgctaatcatagacatttacctaaagtg
gttaagaaagctgaagaaattagaagaaatagttcaaagaagtag

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