Candida tropicalis: CTRG_02156
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Entry
CTRG_02156 CDS
T01115
Name
(RefSeq) pre-mRNA splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ctp
Candida tropicalis
Pathway
ctp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTRG_02156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctp03041
]
CTRG_02156
03009 Ribosome biogenesis [BR:
ctp03009
]
CTRG_02156
Enzymes [BR:
ctp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTRG_02156
Spliceosome [BR:
ctp03041
]
Complex A
U2 snRNP components
U2 related factors
CTRG_02156
Complex B
CTRG_02156
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CTRG_02156
Ribosome biogenesis [BR:
ctp03009
]
Eukaryotic type
90S particles
Helicases
CTRG_02156
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
AAA_23
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
8296290
NCBI-ProteinID:
XP_002547859
UniProt:
C5M9J4
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MSEEERSLKRQKVDESVAEQVAEAAEEELRLHPHPSDEKPLVHHDAGEFKNMKRHETTAK
QAEILEDGPNNPFTGNQFSQKYFDILKVRRDLPVHAQRDEFLRIFHSTQIMVFVGETGSG
KTTQIPQFVLYDEMPHLTGKQVACTQPRRVAAMSVASRVADEMDVELGEEVGYSIRFENN
TGPKTILKYMTDGMLLREAMEDHDLTRYSCIILDEAHERTLATDILMGLIKQVSVRRPDL
KIIIMSATLDAEKFQSYFNDAPLLAVPGRTHPVEIYYTPEFQRDYLDAAIRTVLQIHATE
GEGDILLFLTGEEEIEDACRKISLEGDELVREQNCGPLKVYPLYGSLPPHQQQKIFEPAP
TNPNPKGRPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRVRVESLLVSPISKA
SAQQRAGRAGRTRPGKCFRLYTEEAFKKELIEQSYPEILRSNLASTVLELKKLGVDDLVH
FDFMDPPAPETMMRALEELNYLQCLSDEGDLTALGRMASQFPLDPMLAVMLIGSPAFKCS
EEILTIVAMLSVPNVFVRPASARKRADEAKLAFAQPDGDHLTLINVYEAFISPEAAEIGV
HKWCRDNFLSYRSLTSAKNVRRQLERIMQKHDLELISEYNQISENQYWENIKKALVAGFF
MQVAKKKSGSKSYLTVKDNQDVLIHPSTVLAKEGEWMIYNEFVLTSKNYIRTVTVVKPDW
LVELAPKYYNLDHFAKGDVRLSLERVIDRVDTMNKLEGKKLKKSKK
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagaagaaagatcacttaaaagacaaaaagtcgatgaatcagttgcagaacaa
gtagctgaagcagctgaagaagaacttagattacatccacatccatctgatgaaaaacct
ttggtacatcatgatgctggagaatttaaaaatatgaaacgtcatgaaactactgctaaa
caagcagaaattttagaagatggaccaaataatccatttacaggaaatcaattcagtcag
aaatattttgatattttaaaagttagacgtgatttaccagttcatgctcaacgtgatgag
tttttaagaattttccattcaactcaaattatggtctttgttggggaaactgggtctggt
aaaactactcaaattccacaattcgttttatatgatgaaatgccacatttgacaggtaaa
caagttgcatgtacccaacctagaagagttgcagccatgtctgttgctagcagagttgct
gatgaaatggatgttgaattgggtgaagaagtgggttatagtattagatttgaaaataat
actggtccaaaaactattttaaaatatatgactgatggtatgttgttaagagaagcaatg
gaagatcatgatttaactagatattcttgtattatattggatgaagcgcatgaaagaact
ttagctactgatattttaatggggttgattaaacaagttagtgtaagaagaccagatttg
aaaatcattattatgtctgctactttagatgcagaaaaattccaaagttatttcaatgat
gctccattattggctgttcctggtagaacccatccagttgaaatttattacacacctgaa
ttccaacgtgattatttggatgctgccattagaactgttttacaaatccatgccactgaa
ggtgaaggtgatattttattattccttactggtgaagaagaaattgaagatgcatgtagg
aaaatctcccttgaaggtgatgaattagtaagagaacaaaattgtggtccattaaaagtg
tatccattatatggttctttgccaccacatcaacaacaaaaaattttcgaaccagcacca
acaaatccaaatcctaaaggaagaccaggtagaaaagttgttgtttctaccaacattgct
gaaacttctttaaccattgatggtattgtatatgttgttgatccaggtttttccaaacaa
aaagtttacaatccaagagttagagttgaatcacttttagtctcaccaatttctaaagct
tctgctcaacaaagagctggtagagctggtcgtaccagaccaggtaaatgtttcagatta
tatacagaagaagcattcaaaaaagaattgattgaacaatcatatccagaaatcttgcgt
tcaaatcttgcatctacagttttagaattgaagaaattgggagttgatgatttagttcat
tttgattttatggatccaccagcaccagaaactatgatgagagcattagaagaattgaat
tatttacaatgtttatctgatgaaggtgatttaactgcattaggtagaatggcttcacaa
ttccctcttgatccaatgcttgcagttatgttgattggatctccagcttttaaatgttcc
gaagaaatcttgacaattgttgctatgttgagtgtaccaaatgtatttgttcgtcctgcc
ctggctagaaaaagagctgatgaagccaaacttgcatttgctcaacctgatggtgatcat
ttgactttgatcaatgtttatgaagcttttatttctccagaagctgctgaaattggtgta
cataaatggtgtcgtgataatttcctttcataccgttcattaacttccgccaagaatgtt
cgtcgtcaattggaaagaataatgcaaaaacatgatttggaattgatttctgaatataat
caaatttctgaaaatcaatattgggaaaatattaaaaaagctcttgttgctggatttttc
atgcaagttgctaaaaagaagctgggaagtaagagttatttaactgttaaagataatcaa
gatgttttaatccatccatctacagttcttgctaaagaaggtgaatggatgatttataat
gaatttgttttgacttctaaaaactatataagaacagtaacggttgtcaaacctgattgg
ttagttgaattggctcctaaatattataaccttgatcattttgctaaaggtgatgttaga
ttaagtttggaaagagttatagatagagtagataccatgaacaagttggaaggtaaaaaa
ttgaaaaagtcaaagaaataa
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