Candida tropicalis: CTRG_02248
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Entry
CTRG_02248 CDS
T01115
Name
(RefSeq) ATP-dependent RNA helicase ded1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ctp
Candida tropicalis
Brite
KEGG Orthology (KO) [BR:
ctp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctp03019
]
CTRG_02248
03041 Spliceosome [BR:
ctp03041
]
CTRG_02248
03036 Chromosome and associated proteins [BR:
ctp03036
]
CTRG_02248
Enzymes [BR:
ctp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTRG_02248
Messenger RNA biogenesis [BR:
ctp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CTRG_02248
mRNA cycle factors
Common to processing body (P body) and stress granule
CTRG_02248
Spliceosome [BR:
ctp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CTRG_02248
Chromosome and associated proteins [BR:
ctp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CTRG_02248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8296951
NCBI-ProteinID:
XP_002547951
UniProt:
C5M9T6
LinkDB
All DBs
Position
Unknown
AA seq
665 aa
AA seq
DB search
MSEITKQMNDLSVNDAANTNNNQNQNQNQNQNQTGRRQYVPPHLRNRPQQQQSDASDIPF
GGSRRTGGYNNNGGYNNGGYNNGGYNNGGYNNYNRGGYQNNRGGNYGGRGGRGGYNNAGG
RYQRPTPGVGRWVEGKHEPAARNEKLELELFGTADDSTFQSSGINFDNYDDIPVEASGDD
VPEPITAFTAPPLDELLVENITLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGF
LFPVLSESYLNGPAPVPETTGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRP
CVVYGGADIGQQMRNLDRGCDLLVATPGRLKDLLERGKVSLANIKYLVLDEADRMLDMGF
EPQIRHIVEECDMPEVTDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ
KILYVEDEDKKSVILDLLAANENGLTIVFTETKRMADQLADFLYDQGFPATAIHGDRSQY
EREKALAAFKNGAAPILVATAVAARGLDIPNVGHVINFDLPSDIDDYVHRIGRTGRAGNV
GIATSFFNRGNKNVVKGLIEILSEANQPIPDFLTKVSREAAFGKMSRGGSRGSRGGFRDV
RRGGNSGGYNSGWGNSNGGWGGNSNAAGNNNWGNSSYSQQSGGSNYGGQRSSSSYGNQTG
SNSWW
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatcactaaacaaatgaatgatttgagtgttaacgatgctgctaacactaat
aacaaccaaaatcaaaatcaaaaccaaaaccaaaaccaaactggtcgtagacaatatgtc
ccaccacatttaagaaacagacctcaacaacaacaatcagatgcatctgatattccattt
ggaggttctcgtcgtactggaggttataacaacaacggtggctacaacaacggtggttac
aataacggtggctataacaacggtggttataacaactacaacagaggtggttaccaaaac
aacagaggcggcaactatggtggcagaggcggtagaggtggctacaataatgctggcggt
agataccaaagaccaactccaggtgttggtagatgggttgaaggtaaacacgaaccagcc
gcaagaaatgaaaaattggaattggaattgtttggtactgctgatgattcaactttccaa
tcttctggtattaattttgataactatgatgatatcccagttgaagccagtggtgacgat
gttccagaaccaatcactgctttcactgctcctccattagatgaattattggttgaaaac
attactttatccagattcactaaaccaactccagttcaaaagtattctgttcctattgtt
gctgctggaagagatttgatggcttgtgctcaaactggttctggtaaaactggtggtttc
cttttcccagttttgtctgaatcttacttgaatggtccagctccagttcctgaaactact
ggtgctttttcttcccataaagtttatccaactattcttgttatggccccaaccagagaa
ttggtttcccaaatttatgaagaatccaagaaattcagttacagatcatgggttcgtcca
tgtgttgtttatggtggtgctgatattggtcaacaaatgagaaacttggacagaggttgt
gacttgttggttgccaccccaggtcgtttgaaggatttgttagaaagaggtaaagtttcc
ttggccaatatcaagtacttggttttagatgaagccgatagaatgttagatatgggtttc
gaaccacaaattagacacattgttgaagaatgtgatatgccagaagtcaccgacagacaa
actttgatgttctctgctactttcccaagagatattcaaatgcttgctagagatttcttg
aaggattatgttttcctttctgttggtagagttggttctacttctgaaaacattacccaa
aagatcttgtatgttgaagatgaagacaagaaatccgttattttggatttgttagcagcc
aacgaaaatggtttgactattgttttcactgaaaccaagagaatggctgatcaacttgct
gatttcctttacgaccaaggattcccagctactgctattcatggggatcgttcccaatat
gaaagagaaaaagctcttgctgcattcaagaatggtgctgcaccaatcttggttgctact
gccgtcgctgctagaggtttagatattccaaatgttggtcacgttatcaactttgattta
ccttctgatatcgacgactatgttcatagaattgggcgtactggtcgtgctggtaacgtt
ggtattgctacaagtttcttcaaccgtggtaacaaaaatgtcgttaaaggtttaattgaa
atcttaagtgaagctaatcaacctattccagatttccttactaaagttagcagagaagct
gcttttggtaagatgagtagaggtggaagccgtggttctcgtggtggcttcagagatgtc
agaagaggtggtaactctggtggttacaattctggctggggtaattccaacggtggatgg
ggtggtaactctaatgccgctggtaataacaactggggtaactcatcttattcccaacag
tctggtggttctaactacggtggtcaacgttcttcttcaagctacggtaatcaaaccggt
tctaattcatggtggtaa
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