KEGG   Candida tropicalis: CTRG_02478
Entry
CTRG_02478        CDS       T01115                                 
Name
(RefSeq) predicted protein
  KO
K12881  THO complex subunit 4
Organism
ctp  Candida tropicalis
Pathway
ctp03013  Nucleocytoplasmic transport
ctp03015  mRNA surveillance pathway
ctp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ctp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTRG_02478
  09122 Translation
   03013 Nucleocytoplasmic transport
    CTRG_02478
   03015 mRNA surveillance pathway
    CTRG_02478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctp03019]
    CTRG_02478
   03041 Spliceosome [BR:ctp03041]
    CTRG_02478
Messenger RNA biogenesis [BR:ctp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CTRG_02478
    TREX complex
     CTRG_02478
Spliceosome [BR:ctp03041]
 Complex C
  Other components
   EJC/TREX
    CTRG_02478
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CTRG_02478
SSDB
Motif
Pfam: RRM_1 RRM_3 FoP_duplication Na_H_antiport_2 LplA-B_cat RRM_PARP14_3
Other DBs
NCBI-GeneID: 8297596
NCBI-ProteinID: XP_002548181
UniProt: C5M7V6
LinkDB
Position
Unknown
AA seq 227 aa
MSASLDKSLDDIISSSRKTFKSRRPGAKVGAKGGNQNRVGKKLGGSNNKKNIVKSNKKPA
AAAAPTPAFDLSYATKVNVSGLPRDLKHENIKEFFQQAIGGVQTVALSYNEKGQFKGFAT
VIFKSSKFASTAVEKYNNASIDGGAAKLKLELVIDTSKKPLSARIAPNAPAAAPKNAGAK
KVAAAKAALNKKKAGPAKKQNKPKSKPKQKKKTIEELDQEMADYFDN
NT seq 684 nt   +upstreamnt  +downstreamnt
atgtctgcctcattagataaatccttagacgatatcatttcttcaagtagaaaaacattt
aaatcaagaagaccaggtgctaaagttggcgccaaaggtggcaaccaaaaccgtgttggt
aagaaacttggtggttcaaataacaaaaaaaatattgttaaatccaacaagaaacctgct
gctgctgctgctccaacccctgcttttgatttgtcttatgctactaaagttaatgtttct
ggtttacctagagatttaaaacacgaaaacattaaggaatttttccaacaagctattgga
ggtgttcaaaccgttgccttaagttacaacgaaaaaggtcaattcaaaggttttgctact
gttattttcaaatccagcaagtttgctagtactgctgttgaaaaatacaacaatgcttcc
atcgatggaggtgctgctaaattgaaattagaattggttattgacaccagtaaaaaacca
ttatctgctagaattgctccaaacgctcctgctgcagcaccaaagaatgctggtgccaaa
aaagttgctgctgctaaagctgctcttaacaagaagaaggctggacctgctaaaaagcaa
aacaaaccaaaatcaaagccaaagcaaaagaagaagactattgaagaattggaccaagaa
atggctgattactttgataactaa

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